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Difference between revisions of "TSS:Mm 99898.1"

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000106676.7:0 BC005697:-17 AK151124:-33 AK153227:-33 AK146380:-62 AK150427:-66 AK049832:-67 uc029rpm.1:-134 HQ412668:-134 ENSMUST00000049527.6:...")
 
 
(2 intermediate revisions by the same user not shown)
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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000106676.7:0 BC005697:-17 AK151124:-33 AK153227:-33 AK146380:-62 AK150427:-66 AK049832:-67 uc029rpm.1:-134 HQ412668:-134 ENSMUST00000049527.6:342 NM_021880:342 NM_001313976:342 NM_001313975:342 uc007mcu.1:370 AK005039:370 AK053918:370 AK145797:370 AK051068:370 AK147188:382 AK083383:390 AK145860:403 AK027916:403 BC003461:411 uc007mct.2:-412 AK158562:-412
+
|RIalpha=
 +
|Tse-1=
 +
|Tse1=
 +
|all_trans=MGI:104878
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.045
 
|cpg_percent=0.045
 
|distance=0
 
|distance=0
|distance_to_tss=-344
+
|distance_to_tss=-285
 
|end=109650579
 
|end=109650579
 +
|end_of_center_position=109650577
 
|entrez_id=19084
 
|entrez_id=19084
 
|gc_percent=0.562189
 
|gc_percent=0.562189
|gene_alias=1300018C22Rik|RIalpha|Tse-1|Tse1
+
|gene_alias=1300018C22Rik{{!}}RIalpha{{!}}Tse-1{{!}}Tse1
|gene_description="protein kinase, cAMP dependent regulatory, type I, alpha"
+
|gene_description=protein kinase, cAMP dependent regulatory, type I, alpha
 
|gene_id=19084
 
|gene_id=19084
|gene_name="protein kinase, cAMP dependent regulatory, type I, alpha"
+
|gene_name=protein kinase, cAMP dependent regulatory, type I, alpha
 
|gene_source=MGI:104878
 
|gene_source=MGI:104878
 
|gene_symbol=Prkar1a
 
|gene_symbol=Prkar1a
Line 18: Line 22:
 
|hgnc_mgi_id=MGI:104878
 
|hgnc_mgi_id=MGI:104878
 
|nearest_ensembl=ENSMUSG00000020612
 
|nearest_ensembl=ENSMUSG00000020612
|nearest_promoter_id=NM_021880
+
|nearest_promoter_id=NM_001313975
 
|nearest_refseq=NM_021880
 
|nearest_refseq=NM_021880
 
|nearest_unigene=Mm.30039
 
|nearest_unigene=Mm.30039
|num_trans=25
+
|num_trans=19084
 
|species=mouse
 
|species=mouse
 
|start=109650574
 
|start=109650574
 +
|start_of_center_position=109650576
 
|strand=+
 
|strand=+
 
|transcript_name=ENSMUST00000106676.7
 
|transcript_name=ENSMUST00000106676.7

Latest revision as of 19:36, 28 July 2021

Basic information about the TSS


TSS ID:mm_99898.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:109650574
End:109650579
Strand:+
TSS Score:1
Start of the center position in the TSS region:109650576
End of the center position in the TSS region:109650577



Gene and protein annotation


Transcript_name:ENSMUST00000106676.7
Distance:0
GeneID:19084
HGNC/MGI_ID:MGI:104878
UniProt_ID:A2AI69
Gene_name:protein kinase, cAMP dependent regulatory, type I, alpha
Gene_symbol:Prkar1a
Gene_synonyms:1300018C22Rik RIalpha Tse-1 Tse1
Gene_source:MGI:104878



Transcript annotation


Transcript_name:ENSMUST00000106676.7
Distance:0
Num_trans:19084
All_trans:MGI:104878



TATA-Box annotation


Distance to TSS:-285
Nearest PromoterID:NM_001313975
Entrez ID:19084
Nearest Unigene:Mm.30039
Nearest Refseq:NM_021880
Nearest Ensembl:ENSMUSG00000020612
Gene Name:protein kinase, cAMP dependent regulatory, type I, alpha
Gene Alias:1300018C22Rik|RIalpha|Tse-1|Tse1
Gene Description:protein kinase, cAMP dependent regulatory, type I, alpha
Gene Type:protein-coding
CpG%:0.045
GC%:0.562189
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):