Difference between revisions of "TSS:Mm 99901.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Tse-1= | |Tse-1= | ||
|Tse1= | |Tse1= | ||
| − | |all_trans= | + | |all_trans=MGI:104878 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance=- | + | |distance=-470 |
|distance_to_tss=123 | |distance_to_tss=123 | ||
|end=109651470 | |end=109651470 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_021880 | |nearest_refseq=NM_021880 | ||
|nearest_unigene=Mm.30039 | |nearest_unigene=Mm.30039 | ||
| − | |num_trans= | + | |num_trans=19084 |
|species=mouse | |species=mouse | ||
|start=109651459 | |start=109651459 | ||
| Line 31: | Line 31: | ||
|strand=+ | |strand=+ | ||
|tata_box=-8(TTTTTTAAACCG,+,0.00) | |tata_box=-8(TTTTTTAAACCG,+,0.00) | ||
| − | |transcript_name= | + | |transcript_name=BC003461 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99901.1 | |tss_id=mm_99901.1 | ||
Latest revision as of 19:36, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109651464 |
|---|---|
| End of the center position in the TSS region: | 109651465 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC003461 |
|---|---|
| Distance: | -470 |
| Num_trans: | 19084 |
| All_trans: | MGI:104878 |
TATA-Box annotation
| Distance to TSS: | 123 |
|---|---|
| Nearest PromoterID: | NM_001362677 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Alias: | 1300018C22Rik|RIalpha|Tse-1|Tse1 |
| Gene Description: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -8(TTTTTTAAACCG,+,0.00) |
