Difference between revisions of "TSS:Mm 99941.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000042970.2:219 NM_008425:219 uc007mdw.2:219 AK044915:219 X73052:290 |chr=chr11 |cpg_percent=0.03 |distance=219 |distance_to_tss=-229 |end=1110...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Kcnf1= |
| + | |Kir2.1= | ||
| + | |all_trans=MGI:104744 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-229 | |distance_to_tss=-229 | ||
|end=111065945 | |end=111065945 | ||
| + | |end_of_center_position=111065936 | ||
|entrez_id=16518 | |entrez_id=16518 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=IRK1 | + | |gene_alias=IRK1{{!}}Kcnf1{{!}}Kir2.1 |
| − | |gene_description= | + | |gene_description=potassium inwardly-rectifying channel, subfamily J, member 2 |
|gene_id=16518 | |gene_id=16518 | ||
| − | |gene_name= | + | |gene_name=potassium inwardly-rectifying channel, subfamily J, member 2 |
|gene_source=MGI:104744 | |gene_source=MGI:104744 | ||
|gene_symbol=Kcnj2 | |gene_symbol=Kcnj2 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_008425 | |nearest_refseq=NM_008425 | ||
|nearest_unigene=Mm.4951 | |nearest_unigene=Mm.4951 | ||
| − | |num_trans= | + | |num_trans=16518 |
|species=mouse | |species=mouse | ||
|start=111065925 | |start=111065925 | ||
| + | |start_of_center_position=111065935 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000042970 | + | |transcript_name=ENSMUST00000042970.2 AK044915 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99941.1 | |tss_id=mm_99941.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q543W5 |
}} | }} | ||
Latest revision as of 19:37, 28 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 111065935 |
|---|---|
| End of the center position in the TSS region: | 111065936 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000042970.2 AK044915 |
|---|---|
| Distance: | 219 |
| Num_trans: | 16518 |
| All_trans: | MGI:104744 |
TATA-Box annotation
| Distance to TSS: | -229 |
|---|---|
| Nearest PromoterID: | NM_008425 |
| Entrez ID: | 16518 |
| Nearest Unigene: | Mm.4951 |
| Nearest Refseq: | NM_008425 |
| Nearest Ensembl: | ENSMUSG00000041695 |
| Gene Name: | potassium inwardly-rectifying channel, subfamily J, member 2 |
| Gene Alias: | IRK1|Kcnf1|Kir2.1 |
| Gene Description: | potassium inwardly-rectifying channel, subfamily J, member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
