Difference between revisions of "TSS:Mm 99976.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc007mfh.1:0 AK131679:0 ENSMUST00000129365.1:-24 AK006331:35 |chr=chr11 |cpg_percent=0.01 |distance=0 |distance_to_tss=-25485 |end=114091443 |entrez_id=...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |5330435L01Rik= |
| + | |Sdk-2= | ||
| + | |all_trans=MGI:1916667 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-24407 |
|end=114091443 | |end=114091443 | ||
| + | |end_of_center_position=114091437 | ||
|entrez_id=237979 | |entrez_id=237979 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=4632412F08Rik | + | |gene_alias=4632412F08Rik{{!}}5330435L01Rik{{!}}Sdk-2{{!}}mKIAA1514 |
|gene_description=sidekick cell adhesion molecule 2 | |gene_description=sidekick cell adhesion molecule 2 | ||
|gene_id=100041739 | |gene_id=100041739 | ||
| Line 17: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1916667 | |hgnc_mgi_id=MGI:1916667 | ||
| + | |mKIAA1514= | ||
|nearest_ensembl=ENSMUSG00000041592 | |nearest_ensembl=ENSMUSG00000041592 | ||
|nearest_promoter_id=NM_172800 | |nearest_promoter_id=NM_172800 | ||
|nearest_refseq=NM_172800 | |nearest_refseq=NM_172800 | ||
|nearest_unigene=Mm.130504 | |nearest_unigene=Mm.130504 | ||
| − | |num_trans= | + | |num_trans=100041739 |
|species=mouse | |species=mouse | ||
|start=114091429 | |start=114091429 | ||
| + | |start_of_center_position=114091436 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK131679 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99976.1 | |tss_id=mm_99976.1 | ||
Latest revision as of 19:37, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114091436 |
|---|---|
| End of the center position in the TSS region: | 114091437 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK131679 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100041739 |
| All_trans: | MGI:1916667 |
TATA-Box annotation
| Distance to TSS: | -24407 |
|---|---|
| Nearest PromoterID: | NM_172800 |
| Entrez ID: | 237979 |
| Nearest Unigene: | Mm.130504 |
| Nearest Refseq: | NM_172800 |
| Nearest Ensembl: | ENSMUSG00000041592 |
| Gene Name: | RIKEN cDNA 1700025D23 gene |
| Gene Alias: | 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 |
| Gene Description: | sidekick cell adhesion molecule 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
