Difference between revisions of "TSS:Hg 100072.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=169 |entrez_id=158219 |gc_percent=0.661692 |gene_alias=C9orf52 |gene_description=tetratricopeptide repeat domain 39B |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000506891.1:-10 uc064sez.1:-10 BC070139:-10 AK301185:-12 AK298581:-16 AK091187:-47 KJ905020:59 AK298998:-133 BC142985:-137 ENST00000512701.6:-161 ENST00000380850.8:-161 ENST00000297615.9:-161 ENST00000505732.5:-161 NM_001168340:-161 NM_001168339:-161 NM_001168341:-161 NM_152574:-161 uc003zlr.3:-161 uc011lmr.3:-161 uc011lmq.3:-161 uc010mif.3:-161 AK310482:-161 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=-10 | ||
|distance_to_tss=169 | |distance_to_tss=169 | ||
| + | |end=15307199 | ||
|entrez_id=158219 | |entrez_id=158219 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=C9orf52 | |gene_alias=C9orf52 | ||
|gene_description=tetratricopeptide repeat domain 39B | |gene_description=tetratricopeptide repeat domain 39B | ||
| − | |gene_name=TTC39B | + | |gene_id=158219 |
| + | |gene_name=tetratricopeptide repeat domain 39B | ||
| + | |gene_source=HGNC:23704 | ||
| + | |gene_symbol=TTC39B | ||
| + | |gene_synonyms=FLJ33868 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23704 | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
|nearest_promoter_id=NM_001168341 | |nearest_promoter_id=NM_001168341 | ||
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=15307183 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000506891.1 uc064sez.1 BC070139 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100072.1 | |tss_id=hg_100072.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=H0YAJ6 | ||
}} | }} | ||
Revision as of 17:00, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000506891.1 uc064sez.1 BC070139 |
|---|---|
| Distance: | -10 |
| Num_trans: | 22 |
| All_trans: | ENST00000506891.1:-10 uc064sez.1:-10 BC070139:-10 AK301185:-12 AK298581:-16 AK091187:-47 KJ905020:59 AK298998:-133 BC142985:-137 ENST00000512701.6:-161 ENST00000380850.8:-161 ENST00000297615.9:-161 ENST00000505732.5:-161 NM_001168340:-161 NM_001168339:-161 NM_001168341:-161 NM_152574:-161 uc003zlr.3:-161 uc011lmr.3:-161 uc011lmq.3:-161 uc010mif.3:-161 AK310482:-161 |
TATA-Box annotation
| Distance to TSS: | 169 |
|---|---|
| Nearest PromoterID: | NM_001168341 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | tetratricopeptide repeat domain 39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
