Difference between revisions of "TSS:Hg 100073.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=136 |entrez_id=158219 |gc_percent=0.661692 |gene_alias=C9orf52 |gene_description=tetratricopeptide repeat domain 39B |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000506891.1:0 uc064sez.1:0 AK298581:0 AK301185:0 BC070139:0 AK091187:-1 KJ905020:78 AK298998:-87 BC142985:-91 ENST00000512701.6:-115 ENST00000380850.8:-115 ENST00000297615.9:-115 ENST00000505732.5:-115 NM_001168340:-115 NM_001168339:-115 NM_001168341:-115 NM_152574:-115 uc003zlr.3:-115 uc011lmr.3:-115 uc011lmq.3:-115 uc010mif.3:-115 AK310482:-115 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=0 | ||
|distance_to_tss=136 | |distance_to_tss=136 | ||
| + | |end=15307245 | ||
|entrez_id=158219 | |entrez_id=158219 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=C9orf52 | |gene_alias=C9orf52 | ||
|gene_description=tetratricopeptide repeat domain 39B | |gene_description=tetratricopeptide repeat domain 39B | ||
| − | |gene_name=TTC39B | + | |gene_id=158219 |
| + | |gene_name=tetratricopeptide repeat domain 39B | ||
| + | |gene_source=HGNC:23704 | ||
| + | |gene_symbol=TTC39B | ||
| + | |gene_synonyms=FLJ33868 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23704 | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
|nearest_promoter_id=NM_001168341 | |nearest_promoter_id=NM_001168341 | ||
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=15307202 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000506891.1 uc064sez.1 AK298581 AK301185 BC070139 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100073.1 | |tss_id=hg_100073.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DVQ6 H0YAJ6 | ||
}} | }} | ||
Revision as of 17:00, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000506891.1 uc064sez.1 AK298581 AK301185 BC070139 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000506891.1:0 uc064sez.1:0 AK298581:0 AK301185:0 BC070139:0 AK091187:-1 KJ905020:78 AK298998:-87 BC142985:-91 ENST00000512701.6:-115 ENST00000380850.8:-115 ENST00000297615.9:-115 ENST00000505732.5:-115 NM_001168340:-115 NM_001168339:-115 NM_001168341:-115 NM_152574:-115 uc003zlr.3:-115 uc011lmr.3:-115 uc011lmq.3:-115 uc010mif.3:-115 AK310482:-115 |
TATA-Box annotation
| Distance to TSS: | 136 |
|---|---|
| Nearest PromoterID: | NM_001168341 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | tetratricopeptide repeat domain 39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
