Difference between revisions of "TSS:Hg 100085.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=53 |entrez_id=11168 |gc_percent=0.721393 |gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 |gene_description=PC4 and SFRS1 interacting...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LEDGF= | ||
| + | |PAIP= | ||
| + | |PSIP2= | ||
| + | |all_trans=AF432220:0 BC064135:0 BC013160:0 BC040032:4 AF063020:-6 ENST00000463712.6:9 uc064sfk.1:9 BC022971:-9 ENST00000484265.1:-11 uc064sfm.1:-11 BC033817:-11 ENST00000380715.5:-13 ENST00000488797.1:-13 uc003zly.4:-13 uc064sfl.1:-13 BC044568:-13 ENST00000380716.8:-16 uc003zlz.5:-16 ENST00000380738.8:-17 uc003zlw.6:-17 ENST00000380733.8:-41 NM_033222:-41 NM_001128217:-41 NM_001317898:-41 NM_001317900:-41 uc003zlv.6:-41 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=53 | |distance_to_tss=53 | ||
| + | |end=15510978 | ||
|entrez_id=11168 | |entrez_id=11168 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 | |gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 | ||
|gene_description=PC4 and SFRS1 interacting protein 1 | |gene_description=PC4 and SFRS1 interacting protein 1 | ||
| − | |gene_name=PSIP1 | + | |gene_id=11168 |
| + | |gene_name=PC4 and SFRS1 interacting protein 1 | ||
| + | |gene_source=HGNC:9527 | ||
| + | |gene_symbol=PSIP1 | ||
| + | |gene_synonyms=LEDGF p52 p75 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9527 | ||
|nearest_ensembl=ENSG00000164985 | |nearest_ensembl=ENSG00000164985 | ||
|nearest_promoter_id=NM_001128217 | |nearest_promoter_id=NM_001128217 | ||
|nearest_refseq=NM_021144 | |nearest_refseq=NM_021144 | ||
|nearest_unigene=Hs.658434 | |nearest_unigene=Hs.658434 | ||
| + | |num_trans=26 | ||
| + | |p52= | ||
| + | |p75= | ||
| + | |species=human | ||
| + | |start=15510954 | ||
| + | |strand=- | ||
| + | |transcript_name=AF432220 BC064135 BC013160 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100085.1 | |tss_id=hg_100085.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:01, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF432220 BC064135 BC013160 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | AF432220:0 BC064135:0 BC013160:0 BC040032:4 AF063020:-6 ENST00000463712.6:9 uc064sfk.1:9 BC022971:-9 ENST00000484265.1:-11 uc064sfm.1:-11 BC033817:-11 ENST00000380715.5:-13 ENST00000488797.1:-13 uc003zly.4:-13 uc064sfl.1:-13 BC044568:-13 ENST00000380716.8:-16 uc003zlz.5:-16 ENST00000380738.8:-17 uc003zlw.6:-17 ENST00000380733.8:-41 NM_033222:-41 NM_001128217:-41 NM_001317898:-41 NM_001317900:-41 uc003zlv.6:-41 |
TATA-Box annotation
| Distance to TSS: | 53 |
|---|---|
| Nearest PromoterID: | NM_001128217 |
| Entrez ID: | 11168 |
| Nearest Unigene: | Hs.658434 |
| Nearest Refseq: | NM_021144 |
| Nearest Ensembl: | ENSG00000164985 |
| Gene Name: | PC4 and SFRS1 interacting protein 1 |
| Gene Alias: | DFS70 |
| Gene Description: | PC4 and SFRS1 interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
