Difference between revisions of "TSS:Hg 100128.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=-144 |entrez_id=54796 |gc_percent=0.716418 |gene_alias=BSN2 |gene_description=basonuclin 2 |gene_name=BNC2 |gene_type=protein-c...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000486514.5:84 uc064sgh.1:84 NM_017637:139 NM_001317939:139 NM_001317940:139 ENST00000484726.5:167 uc064sfz.1:167 AK299073:169 ENST00000545497.5:180 uc064sgc.1:180 CR933649:180 ENST00000380667.6:196 uc064sgd.1:196 ENST00000380672.8:221 uc003zml.4:221 AK131398:257 DQ884938:260 DQ884939:260 DQ884940:260 DQ884941:260 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=84 | ||
|distance_to_tss=-144 | |distance_to_tss=-144 | ||
| + | |end=16870938 | ||
|entrez_id=54796 | |entrez_id=54796 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=BSN2 | |gene_alias=BSN2 | ||
|gene_description=basonuclin 2 | |gene_description=basonuclin 2 | ||
| − | |gene_name=BNC2 | + | |gene_id=54796 |
| + | |gene_name=basonuclin 2 | ||
| + | |gene_source=HGNC:30988 | ||
| + | |gene_symbol=BNC2 | ||
| + | |gene_synonyms=BSN2 FLJ20043 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30988 | ||
|nearest_ensembl=ENSG00000173068 | |nearest_ensembl=ENSG00000173068 | ||
|nearest_promoter_id=NM_001317940 | |nearest_promoter_id=NM_001317940 | ||
|nearest_refseq=NM_017637 | |nearest_refseq=NM_017637 | ||
|nearest_unigene=Hs.656581 | |nearest_unigene=Hs.656581 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=16870926 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000486514.5 uc064sgh.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100128.1 | |tss_id=hg_100128.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=S4R3R8 | ||
}} | }} | ||
Revision as of 17:02, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000486514.5 uc064sgh.1 |
|---|---|
| Distance: | 84 |
| Num_trans: | 20 |
| All_trans: | ENST00000486514.5:84 uc064sgh.1:84 NM_017637:139 NM_001317939:139 NM_001317940:139 ENST00000484726.5:167 uc064sfz.1:167 AK299073:169 ENST00000545497.5:180 uc064sgc.1:180 CR933649:180 ENST00000380667.6:196 uc064sgd.1:196 ENST00000380672.8:221 uc003zml.4:221 AK131398:257 DQ884938:260 DQ884939:260 DQ884940:260 DQ884941:260 |
TATA-Box annotation
| Distance to TSS: | -144 |
|---|---|
| Nearest PromoterID: | NM_001317940 |
| Entrez ID: | 54796 |
| Nearest Unigene: | Hs.656581 |
| Nearest Refseq: | NM_017637 |
| Nearest Ensembl: | ENSG00000173068 |
| Gene Name: | basonuclin 2 |
| Gene Alias: | BSN2 |
| Gene Description: | basonuclin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
