Difference between revisions of "TSS:Hg 100147.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=10 |entrez_id=158297 |gc_percent=0.656716 |gene_alias=C9orf138|FAM154A |gene_description=stabilizer of axonemal microtubules 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FAM154A= | ||
| + | |all_trans=ENST00000542071.2:0 NM_001287049:0 uc033cms.2:0 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=0 | ||
|distance_to_tss=10 | |distance_to_tss=10 | ||
| + | |end=19049367 | ||
|entrez_id=158297 | |entrez_id=158297 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=C9orf138|FAM154A | |gene_alias=C9orf138|FAM154A | ||
|gene_description=stabilizer of axonemal microtubules 1 | |gene_description=stabilizer of axonemal microtubules 1 | ||
| − | |gene_name=SAXO1 | + | |gene_id=158297 |
| + | |gene_name=stabilizer of axonemal microtubules 1 | ||
| + | |gene_source=HGNC:28566 | ||
| + | |gene_symbol=SAXO1 | ||
| + | |gene_synonyms=MGC35182 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28566 | ||
|nearest_ensembl=ENSG00000155875 | |nearest_ensembl=ENSG00000155875 | ||
|nearest_promoter_id=NM_001287049 | |nearest_promoter_id=NM_001287049 | ||
|nearest_refseq=NM_153707 | |nearest_refseq=NM_153707 | ||
|nearest_unigene=Hs.731593 | |nearest_unigene=Hs.731593 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=19049321 | ||
| + | |strand=- | ||
|tata_box="16(GCCTTGAAAAGC,-,0.00)" | |tata_box="16(GCCTTGAAAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000542071.2 NM_001287049 uc033cms.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100147.1 | |tss_id=hg_100147.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F6S232 Q8IYX7 | ||
}} | }} | ||
Revision as of 17:02, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000542071.2 NM_001287049 uc033cms.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000542071.2:0 NM_001287049:0 uc033cms.2:0 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001287049 |
| Entrez ID: | 158297 |
| Nearest Unigene: | Hs.731593 |
| Nearest Refseq: | NM_153707 |
| Nearest Ensembl: | ENSG00000155875 |
| Gene Name: | stabilizer of axonemal microtubules 1 |
| Gene Alias: | C9orf138 |
| Gene Description: | stabilizer of axonemal microtubules 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "16(GCCTTGAAAAGC,-,0.00)" |
