Difference between revisions of "TSS:Hg 100200.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=86 |entrez_id=4300 |gc_percent=0.626866 |gene_alias=AF9|YEATS3 |gene_description="MLLT3, super elongation complex subunit" |gene...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |YEATS3= | ||
| + | |all_trans=L13744:0 ENST00000475957.1:6 uc064sin.1:6 BC030550:6 AK225957:-9 AK312914:11 BC036089:-37 ENST00000629733.2:-49 uc064sig.1:-49 BX649194:-49 ENST00000380338.8:-74 NM_004529:-74 uc003zoe.3:-74 KJ897192:185 CU690292:187 AB463323:189 KU178189:190 KU178190:190 NM_001286691:459 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=86 | |distance_to_tss=86 | ||
| + | |end=20622469 | ||
|entrez_id=4300 | |entrez_id=4300 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=AF9|YEATS3 | |gene_alias=AF9|YEATS3 | ||
|gene_description="MLLT3, super elongation complex subunit" | |gene_description="MLLT3, super elongation complex subunit" | ||
| − | |gene_name=MLLT3 | + | |gene_id=4300 |
| + | |gene_name="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3" | ||
| + | |gene_source=HGNC:7136 | ||
| + | |gene_symbol=MLLT3 | ||
| + | |gene_synonyms=AF-9 AF9 YEATS3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7136 | ||
|nearest_ensembl=ENSG00000171843 | |nearest_ensembl=ENSG00000171843 | ||
|nearest_promoter_id=NM_004529 | |nearest_promoter_id=NM_004529 | ||
|nearest_refseq=NM_004529 | |nearest_refseq=NM_004529 | ||
|nearest_unigene=Hs.317248 | |nearest_unigene=Hs.317248 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=20622445 | ||
| + | |strand=- | ||
| + | |transcript_name=L13744 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100200.1 | |tss_id=hg_100200.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:03, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | L13744 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | L13744:0 ENST00000475957.1:6 uc064sin.1:6 BC030550:6 AK225957:-9 AK312914:11 BC036089:-37 ENST00000629733.2:-49 uc064sig.1:-49 BX649194:-49 ENST00000380338.8:-74 NM_004529:-74 uc003zoe.3:-74 KJ897192:185 CU690292:187 AB463323:189 KU178189:190 KU178190:190 NM_001286691:459 |
TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NM_004529 |
| Entrez ID: | 4300 |
| Nearest Unigene: | Hs.317248 |
| Nearest Refseq: | NM_004529 |
| Nearest Ensembl: | ENSG00000171843 |
| Gene Name: | "myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3" |
| Gene Alias: | AF9 |
| Gene Description: | "MLLT3, super elongation complex subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
