Difference between revisions of "TSS:Hg 100213.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=0 |entrez_id=3440 |gc_percent=0.442786 |gene_alias=IFN-alphaA|IFNA|IFNA2B|INFA2 |gene_description=interferon alpha 2 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |IFNA= | ||
| + | |IFNA2B= | ||
| + | |INFA2= | ||
| + | |all_trans=NM_000605:0 ENST00000380206.3:8 uc003zpb.4:8 M54886:8 V00544:8 V00549:8 BC104163:22 BC104164:22 BC074936:23 BC074937:23 KJ891428:67 JN591568:67 JN591569:67 JN591570:67 JN848522:67 AB590747:67 CR541921:67 V00548:85 AY255838:136 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=0 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
| + | |end=21385398 | ||
|entrez_id=3440 | |entrez_id=3440 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
|gene_alias=IFN-alphaA|IFNA|IFNA2B|INFA2 | |gene_alias=IFN-alphaA|IFNA|IFNA2B|INFA2 | ||
|gene_description=interferon alpha 2 | |gene_description=interferon alpha 2 | ||
| − | |gene_name=IFNA2 | + | |gene_id=3440 |
| + | |gene_name="interferon, alpha 2" | ||
| + | |gene_source=HGNC:5423 | ||
| + | |gene_symbol=IFNA2 | ||
| + | |gene_synonyms=IFN-alphaA IFNA | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5423 | ||
|nearest_ensembl=ENSG00000188379 | |nearest_ensembl=ENSG00000188379 | ||
|nearest_promoter_id=NM_000605 | |nearest_promoter_id=NM_000605 | ||
|nearest_refseq=NM_000605 | |nearest_refseq=NM_000605 | ||
|nearest_unigene=Hs.211575 | |nearest_unigene=Hs.211575 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=21385395 | ||
| + | |strand=- | ||
|tata_box="-35(CCCTATTTAAGG,-,0.00)" | |tata_box="-35(CCCTATTTAAGG,-,0.00)" | ||
| + | |transcript_name=NM_000605 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100213.1 | |tss_id=hg_100213.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P01563 | ||
}} | }} | ||
Revision as of 17:04, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_000605 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | NM_000605:0 ENST00000380206.3:8 uc003zpb.4:8 M54886:8 V00544:8 V00549:8 BC104163:22 BC104164:22 BC074936:23 BC074937:23 KJ891428:67 JN591568:67 JN591569:67 JN591570:67 JN848522:67 AB590747:67 CR541921:67 V00548:85 AY255838:136 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_000605 |
| Entrez ID: | 3440 |
| Nearest Unigene: | Hs.211575 |
| Nearest Refseq: | NM_000605 |
| Nearest Ensembl: | ENSG00000188379 |
| Gene Name: | "interferon, alpha 2" |
| Gene Alias: | IFN-alphaA |
| Gene Description: | interferon alpha 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(CCCTATTTAAGG,-,0.00)" |
