Difference between revisions of "TSS:Hg 100295.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=103 |entrez_id=1993 |gc_percent=0.39801 |gene_alias=HEL-N1|HELN1|HUB |gene_description=ELAV like RNA binding protein 2 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HELN1= | ||
| + | |HUB= | ||
| + | |all_trans=ENST00000397312.6:-100 NM_004432:-100 uc003zpu.4:-100 AB209294:-100 ENST00000462649.1:-209 uc064skx.1:-209 U12431:-338 U29943:-338 ENST00000380117.5:-372 uc003zpv.4:-372 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-100 | ||
|distance_to_tss=103 | |distance_to_tss=103 | ||
| + | |end=23825965 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
|gene_alias=HEL-N1|HELN1|HUB | |gene_alias=HEL-N1|HELN1|HUB | ||
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
| − | |gene_name=ELAVL2 | + | |gene_id=1993 |
| + | |gene_name=ELAV like neuron-specific RNA binding protein 2 | ||
| + | |gene_source=HGNC:3313 | ||
| + | |gene_symbol=ELAVL2 | ||
| + | |gene_synonyms=HEL-N1 HuB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
|nearest_promoter_id=NM_004432 | |nearest_promoter_id=NM_004432 | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=23825958 | ||
| + | |strand=- | ||
|tata_box="-82(GTCTTTTTAAAC,-,0.00),-80(CTTTTTAAACTC,+,0.00),23(TCTTTTAAGCCG,+,0.00)" | |tata_box="-82(GTCTTTTTAAAC,-,0.00),-80(CTTTTTAAACTC,+,0.00),23(TCTTTTAAGCCG,+,0.00)" | ||
| + | |transcript_name=ENST00000397312.6 NM_004432 uc003zpu.4 AB209294 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100295.1 | |tss_id=hg_100295.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q12926 | ||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000397312.6 NM_004432 uc003zpu.4 AB209294 |
|---|---|
| Distance: | -100 |
| Num_trans: | 10 |
| All_trans: | ENST00000397312.6:-100 NM_004432:-100 uc003zpu.4:-100 AB209294:-100 ENST00000462649.1:-209 uc064skx.1:-209 U12431:-338 U29943:-338 ENST00000380117.5:-372 uc003zpv.4:-372 |
TATA-Box annotation
| Distance to TSS: | 103 |
|---|---|
| Nearest PromoterID: | NM_004432 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like neuron-specific RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-82(GTCTTTTTAAAC,-,0.00),-80(CTTTTTAAACTC,+,0.00),23(TCTTTTAAGCCG,+,0.00)" |
