Difference between revisions of "TSS:Hg 100296.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-126 |entrez_id=1993 |gc_percent=0.427861 |gene_alias=HEL-N1|HELN1|HUB |gene_description=ELAV like RNA binding protein 2 |gene_n...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |HELN1= | ||
| + | |HUB= | ||
| + | |all_trans=ENST00000462649.1:12 uc064skx.1:12 U12431:-107 U29943:-107 ENST00000397312.6:121 NM_004432:121 uc003zpu.4:121 AB209294:121 ENST00000380117.5:-141 uc003zpv.4:-141 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=12 | ||
|distance_to_tss=-126 | |distance_to_tss=-126 | ||
| + | |end=23826196 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
|gene_alias=HEL-N1|HELN1|HUB | |gene_alias=HEL-N1|HELN1|HUB | ||
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
| − | |gene_name=ELAVL2 | + | |gene_id=1993 |
| + | |gene_name=ELAV like neuron-specific RNA binding protein 2 | ||
| + | |gene_source=HGNC:3313 | ||
| + | |gene_symbol=ELAVL2 | ||
| + | |gene_synonyms=HEL-N1 HuB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
|nearest_promoter_id=NM_004432 | |nearest_promoter_id=NM_004432 | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=23826185 | ||
| + | |strand=- | ||
|tata_box="-55(CCTTTTAAGACG,+,0.00)" | |tata_box="-55(CCTTTTAAGACG,+,0.00)" | ||
| + | |transcript_name=ENST00000462649.1 uc064skx.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100296.1 | |tss_id=hg_100296.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000462649.1 uc064skx.1 |
|---|---|
| Distance: | 12 |
| Num_trans: | 10 |
| All_trans: | ENST00000462649.1:12 uc064skx.1:12 U12431:-107 U29943:-107 ENST00000397312.6:121 NM_004432:121 uc003zpu.4:121 AB209294:121 ENST00000380117.5:-141 uc003zpv.4:-141 |
TATA-Box annotation
| Distance to TSS: | -126 |
|---|---|
| Nearest PromoterID: | NM_004432 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like neuron-specific RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-55(CCTTTTAAGACG,+,0.00)" |
