Difference between revisions of "TSS:Hg 100319.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=70 |entrez_id=80173 |gc_percent=0.721393 |gene_alias=BBS20|CCDC2|CMG-1|CMG1 |gene_description=intraflagellar transport 74 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCDC2= | ||
| + | |CMG-1= | ||
| + | |CMG1= | ||
| + | |all_trans=BC032551:-27 AK022761:-34 AB385043:56 EU176453:57 EU176795:57 KJ898010:58 AK001642:-59 ENST00000520884.5:-119 uc003zqe.3:-119 AK002143:-119 ENST00000523212.1:121 uc064slw.1:121 AF145020:-147 ENST00000397292.7:-349 uc003zqd.4:-349 AL133608:-349 NM_001031689:-356 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-27 | ||
|distance_to_tss=70 | |distance_to_tss=70 | ||
| + | |end=26947114 | ||
|entrez_id=80173 | |entrez_id=80173 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=BBS20|CCDC2|CMG-1|CMG1 | |gene_alias=BBS20|CCDC2|CMG-1|CMG1 | ||
|gene_description=intraflagellar transport 74 | |gene_description=intraflagellar transport 74 | ||
| − | |gene_name= | + | |gene_id=9373 |
| + | |gene_name=phospholipase A2 activating protein | ||
| + | |gene_source=HGNC:9043 | ||
| + | |gene_symbol=PLAA | ||
| + | |gene_synonyms=DOA1 FLJ11281 FLJ12699 PLA2P PLAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9043 | ||
|nearest_ensembl=ENSG00000096872 | |nearest_ensembl=ENSG00000096872 | ||
|nearest_promoter_id=NM_001099223 | |nearest_promoter_id=NM_001099223 | ||
|nearest_refseq=NM_025103 | |nearest_refseq=NM_025103 | ||
|nearest_unigene=Hs.145402 | |nearest_unigene=Hs.145402 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=26947103 | ||
| + | |strand=- | ||
| + | |transcript_name=BC032551 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100319.1 | |tss_id=hg_100319.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC032551 |
|---|---|
| Distance: | -27 |
| Num_trans: | 17 |
| All_trans: | BC032551:-27 AK022761:-34 AB385043:56 EU176453:57 EU176795:57 KJ898010:58 AK001642:-59 ENST00000520884.5:-119 uc003zqe.3:-119 AK002143:-119 ENST00000523212.1:121 uc064slw.1:121 AF145020:-147 ENST00000397292.7:-349 uc003zqd.4:-349 AL133608:-349 NM_001031689:-356 |
TATA-Box annotation
| Distance to TSS: | 70 |
|---|---|
| Nearest PromoterID: | NM_001099223 |
| Entrez ID: | 80173 |
| Nearest Unigene: | Hs.145402 |
| Nearest Refseq: | NM_025103 |
| Nearest Ensembl: | ENSG00000096872 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | BBS20 |
| Gene Description: | intraflagellar transport 74 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
