Difference between revisions of "TSS:Hg 10035.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=2 |entrez_id=54626 |gc_percent=0.761194 |gene_alias=bHLHb40 |gene_description=hes family bHLH transcription factor 2 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000377834.8:0 ENST00000489730.1:0 NM_019089:0 uc001amx.4:0 uc057bug.1:0 AK091122:0 ENST00000487437.5:2 uc057buf.1:2 ENST00000377836.8:6 uc057bud.1:6 BC142687:10 BC132698:27 BC136963:27 KJ902672:87 AB463714:88 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=0 | ||
|distance_to_tss=2 | |distance_to_tss=2 | ||
| + | |end=6419926 | ||
|entrez_id=54626 | |entrez_id=54626 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=bHLHb40 | |gene_alias=bHLHb40 | ||
|gene_description=hes family bHLH transcription factor 2 | |gene_description=hes family bHLH transcription factor 2 | ||
| − | |gene_name=HES2 | + | |gene_id=54626 |
| + | |gene_name=hes family bHLH transcription factor 2 | ||
| + | |gene_source=HGNC:16005 | ||
| + | |gene_symbol=HES2 | ||
| + | |gene_synonyms=bHLHb40 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16005 | ||
|nearest_ensembl=ENSG00000069812 | |nearest_ensembl=ENSG00000069812 | ||
|nearest_promoter_id=NM_019089 | |nearest_promoter_id=NM_019089 | ||
|nearest_refseq=NM_019089 | |nearest_refseq=NM_019089 | ||
|nearest_unigene=Hs.118727 | |nearest_unigene=Hs.118727 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=6419908 | ||
| + | |strand=- | ||
|tata_box="-35(CTCCCTTAAAGC,-,0.00)" | |tata_box="-35(CTCCCTTAAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000377834.8 ENST00000489730.1 NM_019089 uc001amx.4 uc057bug.1 AK091122 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10035.1 | |tss_id=hg_10035.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=K7EJQ0 Q9Y543 | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000377834.8 ENST00000489730.1 NM_019089 uc001amx.4 uc057bug.1 AK091122 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000377834.8:0 ENST00000489730.1:0 NM_019089:0 uc001amx.4:0 uc057bug.1:0 AK091122:0 ENST00000487437.5:2 uc057buf.1:2 ENST00000377836.8:6 uc057bud.1:6 BC142687:10 BC132698:27 BC136963:27 KJ902672:87 AB463714:88 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_019089 |
| Entrez ID: | 54626 |
| Nearest Unigene: | Hs.118727 |
| Nearest Refseq: | NM_019089 |
| Nearest Ensembl: | ENSG00000069812 |
| Gene Name: | hes family bHLH transcription factor 2 |
| Gene Alias: | bHLHb40 |
| Gene Description: | hes family bHLH transcription factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(CTCCCTTAAAGC,-,0.00)" |
