Difference between revisions of "TSS:Hg 100357.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=127 |entrez_id=203228 |gc_percent=0.661692 |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 |gene_description=chromosome 9 open reading...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |DENNL72= | ||
| + | |FTDALS= | ||
| + | |FTDALS1= | ||
| + | |all_trans=AL832229:-73 ENST00000488117.5:-74 uc064sml.1:-74 AL832467:-74 ENST00000380003.7:-76 uc003zqq.4:-76 AK291425:-109 NM_018325:-119 ENST00000379995.1:-381 uc064smm.1:-381 JN681271:-470 AK057806:-470 ENST00000619707.4:-492 ENST00000379997.7:-492 ENST00000461679.1:-492 NM_001256054:-492 NM_145005:-492 uc022bfa.2:-492 uc003zqr.2:-492 uc064smn.1:-492 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=-73 | ||
|distance_to_tss=127 | |distance_to_tss=127 | ||
| + | |end=27573374 | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | ||
|gene_description=chromosome 9 open reading frame 72 | |gene_description=chromosome 9 open reading frame 72 | ||
| − | |gene_name=C9orf72 | + | |gene_id=203228 |
| + | |gene_name=chromosome 9 open reading frame 72 | ||
| + | |gene_source=HGNC:28337 | ||
| + | |gene_symbol=C9orf72 | ||
| + | |gene_synonyms=MGC23980 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28337 | ||
|nearest_ensembl=ENSG00000147894 | |nearest_ensembl=ENSG00000147894 | ||
|nearest_promoter_id=NM_018325 | |nearest_promoter_id=NM_018325 | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=27573357 | ||
| + | |strand=- | ||
| + | |transcript_name=AL832229 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100357.1 | |tss_id=hg_100357.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AL832229 |
|---|---|
| Distance: | -73 |
| Num_trans: | 20 |
| All_trans: | AL832229:-73 ENST00000488117.5:-74 uc064sml.1:-74 AL832467:-74 ENST00000380003.7:-76 uc003zqq.4:-76 AK291425:-109 NM_018325:-119 ENST00000379995.1:-381 uc064smm.1:-381 JN681271:-470 AK057806:-470 ENST00000619707.4:-492 ENST00000379997.7:-492 ENST00000461679.1:-492 NM_001256054:-492 NM_145005:-492 uc022bfa.2:-492 uc003zqr.2:-492 uc064smn.1:-492 |
TATA-Box annotation
| Distance to TSS: | 127 |
|---|---|
| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | chromosome 9 open reading frame 72 |
| Gene Alias: | ALSFTD |
| Gene Description: | chromosome 9 open reading frame 72 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
