Difference between revisions of "TSS:Hg 100358.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=69 |entrez_id=203228 |gc_percent=0.751244 |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 |gene_description=chromosome 9 open reading...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DENNL72= | ||
| + | |FTDALS= | ||
| + | |FTDALS1= | ||
| + | |all_trans=ENST00000380003.7:0 ENST00000488117.5:0 uc003zqq.4:0 uc064sml.1:0 AL832229:0 AL832467:0 AK291425:-30 NM_018325:-40 ENST00000379995.1:-302 uc064smm.1:-302 JN681271:-391 AK057806:-391 ENST00000619707.4:-413 ENST00000379997.7:-413 ENST00000461679.1:-413 NM_001256054:-413 NM_145005:-413 uc022bfa.2:-413 uc003zqr.2:-413 uc064smn.1:-413 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=69 | |distance_to_tss=69 | ||
| + | |end=27573453 | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | ||
|gene_description=chromosome 9 open reading frame 72 | |gene_description=chromosome 9 open reading frame 72 | ||
| − | |gene_name=C9orf72 | + | |gene_id=203228 |
| + | |gene_name=chromosome 9 open reading frame 72 | ||
| + | |gene_source=HGNC:28337 | ||
| + | |gene_symbol=C9orf72 | ||
| + | |gene_synonyms=MGC23980 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28337 | ||
|nearest_ensembl=ENSG00000147894 | |nearest_ensembl=ENSG00000147894 | ||
|nearest_promoter_id=NM_018325 | |nearest_promoter_id=NM_018325 | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=27573394 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380003.7 ENST00000488117.5 uc003zqq.4 uc064sml.1 AL832229 AL832467 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100358.1 | |tss_id=hg_100358.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96LT7 | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000380003.7 ENST00000488117.5 uc003zqq.4 uc064sml.1 AL832229 AL832467 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000380003.7:0 ENST00000488117.5:0 uc003zqq.4:0 uc064sml.1:0 AL832229:0 AL832467:0 AK291425:-30 NM_018325:-40 ENST00000379995.1:-302 uc064smm.1:-302 JN681271:-391 AK057806:-391 ENST00000619707.4:-413 ENST00000379997.7:-413 ENST00000461679.1:-413 NM_001256054:-413 NM_145005:-413 uc022bfa.2:-413 uc003zqr.2:-413 uc064smn.1:-413 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | chromosome 9 open reading frame 72 |
| Gene Alias: | ALSFTD |
| Gene Description: | chromosome 9 open reading frame 72 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
