Difference between revisions of "TSS:Hg 100393.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=-60 |entrez_id=100129250 |gc_percent=0.40796 |gene_alias=C9orf133 |gene_description=TOPORS antisense RNA 1 |gene_name=TOPORS-AS...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000360538.6:-378 ENST00000379858.1:-378 uc003zrb.4:-378 uc003zrc.4:-378 AB045732:-378 AB045733:-378 AF098300:-378 BC060884:-393 NM_005802:-453 NM_001195622:-453 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-378 | ||
|distance_to_tss=-60 | |distance_to_tss=-60 | ||
| + | |end=32552175 | ||
|entrez_id=100129250 | |entrez_id=100129250 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=C9orf133 | |gene_alias=C9orf133 | ||
|gene_description=TOPORS antisense RNA 1 | |gene_description=TOPORS antisense RNA 1 | ||
| − | |gene_name=TOPORS | + | |gene_id=10210 |
| + | |gene_name="topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase" | ||
| + | |gene_source=HGNC:21653 | ||
| + | |gene_symbol=TOPORS | ||
| + | |gene_synonyms=LUN TP53BPL | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:21653 | ||
|nearest_ensembl=ENSG00000235453 | |nearest_ensembl=ENSG00000235453 | ||
|nearest_promoter_id=NR_102376 | |nearest_promoter_id=NR_102376 | ||
|nearest_refseq=NR_033991 | |nearest_refseq=NR_033991 | ||
|nearest_unigene=Hs.664395 | |nearest_unigene=Hs.664395 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=32552172 | ||
| + | |strand=- | ||
|tata_box="-60(CCTTTTAGAGAG,+,0.00)" | |tata_box="-60(CCTTTTAGAGAG,+,0.00)" | ||
| + | |transcript_name=ENST00000360538.6 ENST00000379858.1 uc003zrb.4 uc003zrc.4 AB045732 AB045733 AF098300 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100393.1 | |tss_id=hg_100393.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9NS56 | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000360538.6 ENST00000379858.1 uc003zrb.4 uc003zrc.4 AB045732 AB045733 AF098300 |
|---|---|
| Distance: | -378 |
| Num_trans: | 10 |
| All_trans: | ENST00000360538.6:-378 ENST00000379858.1:-378 uc003zrb.4:-378 uc003zrc.4:-378 AB045732:-378 AB045733:-378 AF098300:-378 BC060884:-393 NM_005802:-453 NM_001195622:-453 |
TATA-Box annotation
| Distance to TSS: | -60 |
|---|---|
| Nearest PromoterID: | NR_102376 |
| Entrez ID: | 100129250 |
| Nearest Unigene: | Hs.664395 |
| Nearest Refseq: | NR_033991 |
| Nearest Ensembl: | ENSG00000235453 |
| Gene Name: | "topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase" |
| Gene Alias: | C9orf133 |
| Gene Description: | TOPORS antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-60(CCTTTTAGAGAG,+,0.00)" |
