Difference between revisions of "TSS:Hg 100442.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=95 |entrez_id=2683 |gc_percent=0.761194 |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 |gene_description="beta-1,4-galacto...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDG2D= | ||
| + | |GGTB2= | ||
| + | |GT1= | ||
| + | |GTB= | ||
| + | |all_trans=M22921:22 U10474:22 D29805:25 X13223:25 X14085:25 HG765099:55 HG765101:55 AK312797:61 AK296928:72 ENST00000535206.5:-88 ENST00000379731.4:-88 uc064soj.1:-88 uc003zsg.3:-88 BC045773:-88 KJ901453:89 X55415:89 AB590749:89 NM_001497:-90 AK316294:110 U10473:433 | ||
| + | |beta4Gal-T1= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=22 | ||
|distance_to_tss=95 | |distance_to_tss=95 | ||
| + | |end=33167268 | ||
|entrez_id=2683 | |entrez_id=2683 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 | |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 | ||
|gene_description="beta-1,4-galactosyltransferase 1" | |gene_description="beta-1,4-galactosyltransferase 1" | ||
| − | |gene_name=B4GALT1 | + | |gene_id=2683 |
| + | |gene_name="beta-1,4-galactosyltransferase 1" | ||
| + | |gene_source=HGNC:924 | ||
| + | |gene_symbol=B4GALT1 | ||
| + | |gene_synonyms=beta4Gal-T1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:924 | ||
|nearest_ensembl=ENSG00000086062 | |nearest_ensembl=ENSG00000086062 | ||
|nearest_promoter_id=NM_001497 | |nearest_promoter_id=NM_001497 | ||
|nearest_refseq=NM_001497 | |nearest_refseq=NM_001497 | ||
|nearest_unigene=Hs.272011 | |nearest_unigene=Hs.272011 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=33167257 | ||
| + | |strand=- | ||
|tata_box="71(CTTCTTAAAGCG,+,0.00)" | |tata_box="71(CTTCTTAAAGCG,+,0.00)" | ||
| + | |transcript_name=M22921 U10474 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100442.1 | |tss_id=hg_100442.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:09, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | M22921 U10474 |
|---|---|
| Distance: | 22 |
| Num_trans: | 20 |
| All_trans: | M22921:22 U10474:22 D29805:25 X13223:25 X14085:25 HG765099:55 HG765101:55 AK312797:61 AK296928:72 ENST00000535206.5:-88 ENST00000379731.4:-88 uc064soj.1:-88 uc003zsg.3:-88 BC045773:-88 KJ901453:89 X55415:89 AB590749:89 NM_001497:-90 AK316294:110 U10473:433 |
TATA-Box annotation
| Distance to TSS: | 95 |
|---|---|
| Nearest PromoterID: | NM_001497 |
| Entrez ID: | 2683 |
| Nearest Unigene: | Hs.272011 |
| Nearest Refseq: | NM_001497 |
| Nearest Ensembl: | ENSG00000086062 |
| Gene Name: | "beta-1,4-galactosyltransferase 1" |
| Gene Alias: | B4GAL-T1 |
| Gene Description: | "beta-1,4-galactosyltransferase 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "71(CTTCTTAAAGCG,+,0.00)" |
