Difference between revisions of "TSS:Hg 1005.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=5 |entrez_id=55160 |gc_percent=0.646766 |gene_alias=GrinchGEF |gene_description=Rho guanine nucleotide exchange factor 10 like |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000375408.7:0 NM_001319838:0 uc010ocs.3:0 AK092020:0 AK300264:26 BC111058:334 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=0 | ||
|distance_to_tss=5 | |distance_to_tss=5 | ||
| + | |end=17618324 | ||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=GrinchGEF | |gene_alias=GrinchGEF | ||
|gene_description=Rho guanine nucleotide exchange factor 10 like | |gene_description=Rho guanine nucleotide exchange factor 10 like | ||
| − | |gene_name=ARHGEF10L | + | |gene_id=55160 |
| + | |gene_name=Rho guanine nucleotide exchange factor 10 like | ||
| + | |gene_source=HGNC:25540 | ||
| + | |gene_symbol=ARHGEF10L | ||
| + | |gene_synonyms=FLJ10521 KIAA1626 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25540 | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
|nearest_promoter_id=NM_001319838 | |nearest_promoter_id=NM_001319838 | ||
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=17618311 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000375408.7 NM_001319838 uc010ocs.3 AK092020 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1005.1 | |tss_id=hg_1005.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VXI4 | ||
}} | }} | ||
Revision as of 17:10, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375408.7 NM_001319838 uc010ocs.3 AK092020 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000375408.7:0 NM_001319838:0 uc010ocs.3:0 AK092020:0 AK300264:26 BC111058:334 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001319838 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | Rho guanine nucleotide exchange factor 10 like |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
