Difference between revisions of "TSS:Hg 100504.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=132 |entrez_id=84688 |gc_percent=0.621891 |gene_alias=CBE1|NYD-SP22|SMRP1|bA573M23.4 |gene_description=chromosome 9 open readin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NYD-SP22= | ||
| + | |SMRP1= | ||
| + | |all_trans=AK225981:-19 ENST00000379124.5:-50 uc064srw.1:-50 ENST00000379126.7:-57 uc003zuf.3:-57 AF367474:-57 ENST00000379127.1:-79 uc022bgb.3:-79 AK094751:-108 ENST00000379133.7:-119 NM_001252195:-119 NM_147168:-119 NM_147169:-119 uc003zug.3:-119 | ||
| + | |bA573M23.4= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-19 | ||
|distance_to_tss=132 | |distance_to_tss=132 | ||
| + | |end=34381481 | ||
|entrez_id=84688 | |entrez_id=84688 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=CBE1|NYD-SP22|SMRP1|bA573M23.4 | |gene_alias=CBE1|NYD-SP22|SMRP1|bA573M23.4 | ||
|gene_description=chromosome 9 open reading frame 24 | |gene_description=chromosome 9 open reading frame 24 | ||
| − | |gene_name=C9orf24 | + | |gene_id=84688 |
| + | |gene_name=chromosome 9 open reading frame 24 | ||
| + | |gene_source=HGNC:19919 | ||
| + | |gene_symbol=C9orf24 | ||
| + | |gene_synonyms=CBE1 MGC32921 MGC33614 NYD-SP22 SMRP1 bA573M23.4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19919 | ||
|nearest_ensembl=ENSG00000164972 | |nearest_ensembl=ENSG00000164972 | ||
|nearest_promoter_id=NM_147168 | |nearest_promoter_id=NM_147168 | ||
|nearest_refseq=NM_032596 | |nearest_refseq=NM_032596 | ||
|nearest_unigene=Hs.50334 | |nearest_unigene=Hs.50334 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=34381455 | ||
| + | |strand=- | ||
|tata_box="-38(ACCCCTAAAAGG,-,0.00)" | |tata_box="-38(ACCCCTAAAAGG,-,0.00)" | ||
| + | |transcript_name=AK225981 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100504.1 | |tss_id=hg_100504.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:10, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK225981 |
|---|---|
| Distance: | -19 |
| Num_trans: | 14 |
| All_trans: | AK225981:-19 ENST00000379124.5:-50 uc064srw.1:-50 ENST00000379126.7:-57 uc003zuf.3:-57 AF367474:-57 ENST00000379127.1:-79 uc022bgb.3:-79 AK094751:-108 ENST00000379133.7:-119 NM_001252195:-119 NM_147168:-119 NM_147169:-119 uc003zug.3:-119 |
TATA-Box annotation
| Distance to TSS: | 132 |
|---|---|
| Nearest PromoterID: | NM_147168 |
| Entrez ID: | 84688 |
| Nearest Unigene: | Hs.50334 |
| Nearest Refseq: | NM_032596 |
| Nearest Ensembl: | ENSG00000164972 |
| Gene Name: | chromosome 9 open reading frame 24 |
| Gene Alias: | CBE1 |
| Gene Description: | chromosome 9 open reading frame 24 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-38(ACCCCTAAAAGG,-,0.00)" |
