Difference between revisions of "TSS:Hg 100524.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=13 |entrez_id=1271 |gc_percent=0.78607 |gene_alias=- |gene_description=ciliary neurotrophic factor receptor |gene_name=CNTFR |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000378980.7:-6 NM_001842:-6 NM_147164:-6 uc003zup.2:-6 ENST00000351266.8:11 uc003zuq.3:11 M73238:11 BC001492:23 ENST00000417345.2:-392 uc064sso.1:-392 ENST00000610543.4:-409 NM_001207011:-409 uc022bgg.2:-409 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| + | |distance=-6 | ||
|distance_to_tss=13 | |distance_to_tss=13 | ||
| + | |end=34589731 | ||
|entrez_id=1271 | |entrez_id=1271 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ciliary neurotrophic factor receptor | |gene_description=ciliary neurotrophic factor receptor | ||
| − | |gene_name=CNTFR | + | |gene_id=1271 |
| + | |gene_name=ciliary neurotrophic factor receptor | ||
| + | |gene_source=HGNC:2170 | ||
| + | |gene_symbol=CNTFR | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2170 | ||
|nearest_ensembl=ENSG00000122756 | |nearest_ensembl=ENSG00000122756 | ||
|nearest_promoter_id=NM_001842 | |nearest_promoter_id=NM_001842 | ||
|nearest_refseq=NM_001842 | |nearest_refseq=NM_001842 | ||
|nearest_unigene=Hs.129966 | |nearest_unigene=Hs.129966 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=34589716 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000378980.7 NM_001842 NM_147164 uc003zup.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100524.1 | |tss_id=hg_100524.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P26992 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378980.7 NM_001842 NM_147164 uc003zup.2 |
|---|---|
| Distance: | -6 |
| Num_trans: | 13 |
| All_trans: | ENST00000378980.7:-6 NM_001842:-6 NM_147164:-6 uc003zup.2:-6 ENST00000351266.8:11 uc003zuq.3:11 M73238:11 BC001492:23 ENST00000417345.2:-392 uc064sso.1:-392 ENST00000610543.4:-409 NM_001207011:-409 uc022bgg.2:-409 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001842 |
| Entrez ID: | 1271 |
| Nearest Unigene: | Hs.129966 |
| Nearest Refseq: | NM_001842 |
| Nearest Ensembl: | ENSG00000122756 |
| Gene Name: | ciliary neurotrophic factor receptor |
| Gene Alias: | - |
| Gene Description: | ciliary neurotrophic factor receptor |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
