Difference between revisions of "TSS:Hg 100530.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=32 |entrez_id=11258 |gc_percent=0.621891 |gene_alias=DCTN-22|DCTN22 |gene_description=dynactin subunit 3 |gene_name=DCTN3 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DCTN22= | ||
| + | |all_trans=ENST00000341694.6:0 ENST00000259632.11:0 ENST00000477738.6:0 ENST00000378913.6:0 uc003zuw.3:0 uc003zux.3:0 uc033cpi.2:0 uc064ssv.1:0 BC000319:0 BC003004:0 AF082513:0 BC107697:0 AK314730:0 ENST00000378911.3:2 uc064ssw.1:2 AK091661:-2 AB463589:2 CR541889:2 KJ893266:2 DQ891980:2 EU176665:2 CU674154:2 ENST00000378916.8:-7 NM_001281425:-7 NM_001281426:-7 NM_007234:-7 NM_001281427:-7 NM_024348:-7 uc033cpj.1:-7 ENST00000421919.5:23 uc064sss.1:23 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=0 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| + | |end=34620516 | ||
|entrez_id=11258 | |entrez_id=11258 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=DCTN-22|DCTN22 | |gene_alias=DCTN-22|DCTN22 | ||
|gene_description=dynactin subunit 3 | |gene_description=dynactin subunit 3 | ||
| − | |gene_name=DCTN3 | + | |gene_id=11258 |
| + | |gene_name=dynactin subunit 3 | ||
| + | |gene_source=HGNC:2713 | ||
| + | |gene_symbol=DCTN3 | ||
| + | |gene_synonyms=DCTN-22 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2713 | ||
|nearest_ensembl=ENSG00000137100 | |nearest_ensembl=ENSG00000137100 | ||
|nearest_promoter_id=NM_001281426 | |nearest_promoter_id=NM_001281426 | ||
|nearest_refseq=NM_007234 | |nearest_refseq=NM_007234 | ||
|nearest_unigene=Hs.511768 | |nearest_unigene=Hs.511768 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=34620465 | ||
| + | |strand=- | ||
|tata_box="-76(CTGCATAAAGGG,-,0.00)" | |tata_box="-76(CTGCATAAAGGG,-,0.00)" | ||
| + | |transcript_name=ENST00000341694.6 ENST00000259632.11 ENST00000477738.6 ENST00000378913.6 uc003zuw.3 uc003zux.3 uc033cpi.2 uc064ssv.1 BC000319 BC003004 AF082513 BC107697 AK314730 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100530.1 | |tss_id=hg_100530.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O75935 X6RA56 X6RLR1 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341694.6 ENST00000259632.11 ENST00000477738.6 ENST00000378913.6 uc003zuw.3 uc003zux.3 uc033cpi.2 uc064ssv.1 BC000319 BC003004 AF082513 BC107697 AK314730 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000341694.6:0 ENST00000259632.11:0 ENST00000477738.6:0 ENST00000378913.6:0 uc003zuw.3:0 uc003zux.3:0 uc033cpi.2:0 uc064ssv.1:0 BC000319:0 BC003004:0 AF082513:0 BC107697:0 AK314730:0 ENST00000378911.3:2 uc064ssw.1:2 AK091661:-2 AB463589:2 CR541889:2 KJ893266:2 DQ891980:2 EU176665:2 CU674154:2 ENST00000378916.8:-7 NM_001281425:-7 NM_001281426:-7 NM_007234:-7 NM_001281427:-7 NM_024348:-7 uc033cpj.1:-7 ENST00000421919.5:23 uc064sss.1:23 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001281426 |
| Entrez ID: | 11258 |
| Nearest Unigene: | Hs.511768 |
| Nearest Refseq: | NM_007234 |
| Nearest Ensembl: | ENSG00000137100 |
| Gene Name: | dynactin subunit 3 |
| Gene Alias: | DCTN-22 |
| Gene Description: | dynactin subunit 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-76(CTGCATAAAGGG,-,0.00)" |
