Difference between revisions of "TSS:Hg 100539.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=68 |entrez_id=10280 |gc_percent=0.78607 |gene_alias=ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R |gene_descripti...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DSMA2= | ||
| + | |OPRS1= | ||
| + | |SIG-1R= | ||
| + | |SR-BP= | ||
| + | |SR-BP1= | ||
| + | |SRBP= | ||
| + | |all_trans=ENST00000378892.5:0 ENST00000353468.4:0 ENST00000277010.8:0 uc003zuz.3:0 uc064ssx.1:0 uc003zvb.5:0 BC010104:0 BC007839:0 AK222899:0 AK098451:0 U79528:0 U75283:0 BC004899:0 AK299130:0 AK291092:0 AY633611:0 BC006307:0 ENST00000461426.1:-2 uc064ssy.1:-2 ENST00000477726.1:-15 uc003zvc.5:-15 AK130502:-15 KJ892987:25 AF226604:25 DQ644568:25 DQ647702:25 DQ656583:25 CR457075:25 DQ892881:25 DQ896130:25 KJ906030:25 NR_104108:-32 NM_005866:-32 NM_147157:-32 NM_001282209:-32 NM_001282208:-32 NM_001282207:-32 NM_001282206:-32 NM_001282205:-32 ENST00000497006.1:39 uc064ssz.1:39 ENST00000478146.1:310 uc064sta.1:310 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=68 | |distance_to_tss=68 | ||
| + | |end=34637794 | ||
|entrez_id=10280 | |entrez_id=10280 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R | |gene_alias=ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R | ||
|gene_description=sigma non-opioid intracellular receptor 1 | |gene_description=sigma non-opioid intracellular receptor 1 | ||
| − | |gene_name=SIGMAR1 | + | |gene_id=10280 |
| + | |gene_name=sigma non-opioid intracellular receptor 1 | ||
| + | |gene_source=HGNC:8157 | ||
| + | |gene_symbol=SIGMAR1 | ||
| + | |gene_synonyms=SR-BP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSigmaR1= | ||
| + | |hgnc_mgi_id=HGNC:8157 | ||
|nearest_ensembl=ENSG00000147955 | |nearest_ensembl=ENSG00000147955 | ||
|nearest_promoter_id=NM_001282207 | |nearest_promoter_id=NM_001282207 | ||
|nearest_refseq=NM_005866 | |nearest_refseq=NM_005866 | ||
|nearest_unigene=Hs.522087 | |nearest_unigene=Hs.522087 | ||
| + | |num_trans=43 | ||
| + | |sigma1R= | ||
| + | |species=human | ||
| + | |start=34637721 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000378892.5 ENST00000353468.4 ENST00000277010.8 uc003zuz.3 uc064ssx.1 uc003zvb.5 BC010104 BC007839 AK222899 AK098451 U79528 U75283 BC004899 AK299130 AK291092 AY633611 BC006307 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100539.1 | |tss_id=hg_100539.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DR71 Q5T1J1 Q99720 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000378892.5 ENST00000353468.4 ENST00000277010.8 uc003zuz.3 uc064ssx.1 uc003zvb.5 BC010104 BC007839 AK222899 AK098451 U79528 U75283 BC004899 AK299130 AK291092 AY633611 BC006307 |
|---|---|
| Distance: | 0 |
| Num_trans: | 43 |
| All_trans: | ENST00000378892.5:0 ENST00000353468.4:0 ENST00000277010.8:0 uc003zuz.3:0 uc064ssx.1:0 uc003zvb.5:0 BC010104:0 BC007839:0 AK222899:0 AK098451:0 U79528:0 U75283:0 BC004899:0 AK299130:0 AK291092:0 AY633611:0 BC006307:0 ENST00000461426.1:-2 uc064ssy.1:-2 ENST00000477726.1:-15 uc003zvc.5:-15 AK130502:-15 KJ892987:25 AF226604:25 DQ644568:25 DQ647702:25 DQ656583:25 CR457075:25 DQ892881:25 DQ896130:25 KJ906030:25 NR_104108:-32 NM_005866:-32 NM_147157:-32 NM_001282209:-32 NM_001282208:-32 NM_001282207:-32 NM_001282206:-32 NM_001282205:-32 ENST00000497006.1:39 uc064ssz.1:39 ENST00000478146.1:310 uc064sta.1:310 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_001282207 |
| Entrez ID: | 10280 |
| Nearest Unigene: | Hs.522087 |
| Nearest Refseq: | NM_005866 |
| Nearest Ensembl: | ENSG00000147955 |
| Gene Name: | sigma non-opioid intracellular receptor 1 |
| Gene Alias: | ALS16 |
| Gene Description: | sigma non-opioid intracellular receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
