Difference between revisions of "TSS:Hg 100544.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=3 |entrez_id=6363 |gc_percent=0.562189 |gene_alias=CKb11|ELC|MIP-3b|MIP3B|SCYA19 |gene_description=C-C motif chemokine ligand 19...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ELC= | ||
| + | |MIP-3b= | ||
| + | |MIP3B= | ||
| + | |SCYA19= | ||
| + | |all_trans=ENST00000311925.6:0 NM_006274:0 uc003zvn.4:0 AB000887:0 AK311945:0 BC027968:4 U88321:9 ENST00000378800.3:63 uc064suw.1:63 EU176240:126 DQ895236:126 AB590424:126 KJ892110:127 U77180:128 CR456868:128 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=3 | |distance_to_tss=3 | ||
| + | |end=34691281 | ||
|entrez_id=6363 | |entrez_id=6363 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
|gene_alias=CKb11|ELC|MIP-3b|MIP3B|SCYA19 | |gene_alias=CKb11|ELC|MIP-3b|MIP3B|SCYA19 | ||
|gene_description=C-C motif chemokine ligand 19 | |gene_description=C-C motif chemokine ligand 19 | ||
| − | |gene_name=CCL19 | + | |gene_id=6363 |
| + | |gene_name=C-C motif chemokine ligand 19 | ||
| + | |gene_source=HGNC:10617 | ||
| + | |gene_symbol=CCL19 | ||
| + | |gene_synonyms=CKb11 ELC MIP-3b exodus-3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10617 | ||
|nearest_ensembl=ENSG00000172724 | |nearest_ensembl=ENSG00000172724 | ||
|nearest_promoter_id=NM_006274 | |nearest_promoter_id=NM_006274 | ||
|nearest_refseq=NM_006274 | |nearest_refseq=NM_006274 | ||
|nearest_unigene=Hs.50002 | |nearest_unigene=Hs.50002 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=34691266 | ||
| + | |strand=- | ||
|tata_box="-34(GGCCATAAATAG,-,0.00),-32(CCATAAATAGGA,+,0.00)" | |tata_box="-34(GGCCATAAATAG,-,0.00),-32(CCATAAATAGGA,+,0.00)" | ||
| + | |transcript_name=ENST00000311925.6 NM_006274 uc003zvn.4 AB000887 AK311945 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100544.1 | |tss_id=hg_100544.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6IBD6 Q99731 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000311925.6 NM_006274 uc003zvn.4 AB000887 AK311945 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000311925.6:0 NM_006274:0 uc003zvn.4:0 AB000887:0 AK311945:0 BC027968:4 U88321:9 ENST00000378800.3:63 uc064suw.1:63 EU176240:126 DQ895236:126 AB590424:126 KJ892110:127 U77180:128 CR456868:128 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_006274 |
| Entrez ID: | 6363 |
| Nearest Unigene: | Hs.50002 |
| Nearest Refseq: | NM_006274 |
| Nearest Ensembl: | ENSG00000172724 |
| Gene Name: | C-C motif chemokine ligand 19 |
| Gene Alias: | CKb11 |
| Gene Description: | C-C motif chemokine ligand 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GGCCATAAATAG,-,0.00),-32(CCATAAATAGGA,+,0.00)" |
