Difference between revisions of "TSS:Hg 100547.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=71 |entrez_id=259308 |gc_percent=0.472637 |gene_alias=C9orf144B |gene_description=family with sequence similarity 205 member A |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000378788.3:0 uc011lor.3:0 AK302320:0 AK301951:0 NM_001141917:-65 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=71 | |distance_to_tss=71 | ||
| + | |end=34729473 | ||
|entrez_id=259308 | |entrez_id=259308 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
|gene_alias=C9orf144B | |gene_alias=C9orf144B | ||
|gene_description=family with sequence similarity 205 member A | |gene_description=family with sequence similarity 205 member A | ||
| − | |gene_name=FAM205A | + | |gene_id=259308 |
| + | |gene_name=family with sequence similarity 205 member A | ||
| + | |gene_source=HGNC:41911 | ||
| + | |gene_symbol=FAM205A | ||
| + | |gene_synonyms=C9orf144B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:41911 | ||
|nearest_ensembl=ENSG00000205108 | |nearest_ensembl=ENSG00000205108 | ||
|nearest_promoter_id=NM_001141917 | |nearest_promoter_id=NM_001141917 | ||
|nearest_refseq=NM_001141917 | |nearest_refseq=NM_001141917 | ||
|nearest_unigene=Hs.522093 | |nearest_unigene=Hs.522093 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=34729460 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000378788.3 uc011lor.3 AK302320 AK301951 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100547.1 | |tss_id=hg_100547.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DY95 Q6ZU69 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378788.3 uc011lor.3 AK302320 AK301951 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000378788.3:0 uc011lor.3:0 AK302320:0 AK301951:0 NM_001141917:-65 |
TATA-Box annotation
| Distance to TSS: | 71 |
|---|---|
| Nearest PromoterID: | NM_001141917 |
| Entrez ID: | 259308 |
| Nearest Unigene: | Hs.522093 |
| Nearest Refseq: | NM_001141917 |
| Nearest Ensembl: | ENSG00000205108 |
| Gene Name: | family with sequence similarity 205 member A |
| Gene Alias: | C9orf144B |
| Gene Description: | family with sequence similarity 205 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
