Difference between revisions of "TSS:Hg 100552.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=32 |entrez_id=389715 |gc_percent=0.492537 |gene_alias=C9orf144|FAM205B |gene_description=transmembrane protein C9orf144B pseudog...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FAM205B= | ||
| + | |all_trans=BX648118:18 ENST00000455647.2:-27 NR_024481:-27 AK128180:-27 ENST00000378786.1:52 ENST00000399773.10:56 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=18 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| + | |end=34838559 | ||
|entrez_id=389715 | |entrez_id=389715 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
|gene_alias=C9orf144|FAM205B | |gene_alias=C9orf144|FAM205B | ||
|gene_description=transmembrane protein C9orf144B pseudogene | |gene_description=transmembrane protein C9orf144B pseudogene | ||
| − | |gene_name=FAM205BP | + | |gene_id=389715 |
| + | |gene_name="family with sequence similarity 205 member B, pseudogene" | ||
| + | |gene_source=HGNC:24504 | ||
| + | |gene_symbol=FAM205BP | ||
| + | |gene_synonyms=C9orf144A DKFZp434J193 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:24504 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_024481 | |nearest_promoter_id=NR_024481 | ||
|nearest_refseq=NM_001126494 | |nearest_refseq=NM_001126494 | ||
|nearest_unigene=Hs.713965 | |nearest_unigene=Hs.713965 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=34838548 | ||
| + | |strand=- | ||
| + | |transcript_name=BX648118 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100552.1 | |tss_id=hg_100552.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BX648118 |
|---|---|
| Distance: | 18 |
| Num_trans: | 6 |
| All_trans: | BX648118:18 ENST00000455647.2:-27 NR_024481:-27 AK128180:-27 ENST00000378786.1:52 ENST00000399773.10:56 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NR_024481 |
| Entrez ID: | 389715 |
| Nearest Unigene: | Hs.713965 |
| Nearest Refseq: | NM_001126494 |
| Nearest Ensembl: | |
| Gene Name: | "family with sequence similarity 205 member B, pseudogene" |
| Gene Alias: | C9orf144 |
| Gene Description: | transmembrane protein C9orf144B pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.01 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
