Difference between revisions of "TSS:Hg 100585.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-12 |entrez_id=730112 |gc_percent=0.626866 |gene_alias=- |gene_description=family with sequence similarity 166 member B |gene_na...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000619051.4:9 ENST00000399742.6:9 ENST00000447837.1:9 NM_001164310:9 NM_001287239:9 NM_001287238:9 NM_001099951:9 uc064swv.1:9 uc010mkr.4:9 uc003zwy.4:9 BC146928:9 BC146933:9 BC171840:9 BC171851:9 BC129999:9 ENST00000492890.5:34 uc064swu.1:34 KJ896345:78 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=9 | ||
|distance_to_tss=-12 | |distance_to_tss=-12 | ||
| + | |end=35563914 | ||
|entrez_id=730112 | |entrez_id=730112 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=family with sequence similarity 166 member B | |gene_description=family with sequence similarity 166 member B | ||
| − | |gene_name=FAM166B | + | |gene_id=730112 |
| + | |gene_name=family with sequence similarity 166 member B | ||
| + | |gene_source=HGNC:34242 | ||
| + | |gene_symbol=FAM166B | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:34242 | ||
|nearest_ensembl=ENSG00000215187 | |nearest_ensembl=ENSG00000215187 | ||
|nearest_promoter_id=NM_001287239 | |nearest_promoter_id=NM_001287239 | ||
|nearest_refseq=NM_001099951 | |nearest_refseq=NM_001099951 | ||
|nearest_unigene=Hs.98959 | |nearest_unigene=Hs.98959 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=35563907 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000619051.4 ENST00000399742.6 ENST00000447837.1 NM_001164310 NM_001287239 NM_001287238 NM_001099951 uc064swv.1 uc010mkr.4 uc003zwy.4 BC146928 BC146933 BC171840 BC171851 BC129999 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100585.1 | |tss_id=hg_100585.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WXD4 A8MTA8 B7ZW26 B7ZW33 | ||
}} | }} | ||
Revision as of 17:12, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000619051.4 ENST00000399742.6 ENST00000447837.1 NM_001164310 NM_001287239 NM_001287238 NM_001099951 uc064swv.1 uc010mkr.4 uc003zwy.4 BC146928 BC146933 BC171840 BC171851 BC129999 |
|---|---|
| Distance: | 9 |
| Num_trans: | 18 |
| All_trans: | ENST00000619051.4:9 ENST00000399742.6:9 ENST00000447837.1:9 NM_001164310:9 NM_001287239:9 NM_001287238:9 NM_001099951:9 uc064swv.1:9 uc010mkr.4:9 uc003zwy.4:9 BC146928:9 BC146933:9 BC171840:9 BC171851:9 BC129999:9 ENST00000492890.5:34 uc064swu.1:34 KJ896345:78 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_001287239 |
| Entrez ID: | 730112 |
| Nearest Unigene: | Hs.98959 |
| Nearest Refseq: | NM_001099951 |
| Nearest Ensembl: | ENSG00000215187 |
| Gene Name: | family with sequence similarity 166 member B |
| Gene Alias: | - |
| Gene Description: | family with sequence similarity 166 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
