Difference between revisions of "TSS:Hg 100597.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=403 |entrez_id=27240 |gc_percent=0.597015 |gene_alias=SIT|SIT-R |gene_description=signaling threshold regulating transmembrane a...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SIT-R= | ||
| + | |all_trans=ENST00000486859.5:76 uc064sxp.1:76 AK093793:-155 AB527705:-308 ENST00000474403.1:-362 uc064sxq.1:-362 AK314758:-383 ENST00000259608.7:-392 uc003zxe.3:-392 AJ010059:-392 JQ924063:-392 BC102029:-400 BC104491:-400 BC107484:-400 ENST00000618781.1:-402 NM_014450:-402 uc064sxo.1:-402 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=76 | ||
|distance_to_tss=403 | |distance_to_tss=403 | ||
| + | |end=35650548 | ||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=SIT|SIT-R | |gene_alias=SIT|SIT-R | ||
|gene_description=signaling threshold regulating transmembrane adaptor 1 | |gene_description=signaling threshold regulating transmembrane adaptor 1 | ||
| − | |gene_name=SIT1 | + | |gene_id=27240 |
| + | |gene_name=signaling threshold regulating transmembrane adaptor 1 | ||
| + | |gene_source=HGNC:17710 | ||
| + | |gene_symbol=SIT1 | ||
| + | |gene_synonyms=SIT | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17710 | ||
|nearest_ensembl=ENSG00000137078 | |nearest_ensembl=ENSG00000137078 | ||
|nearest_promoter_id=NM_014450 | |nearest_promoter_id=NM_014450 | ||
|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=35650545 | ||
| + | |strand=- | ||
|tata_box="-53(CCTCTTAGGGGC,+,0.00)" | |tata_box="-53(CCTCTTAGGGGC,+,0.00)" | ||
| + | |transcript_name=ENST00000486859.5 uc064sxp.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100597.1 | |tss_id=hg_100597.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:12, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000486859.5 uc064sxp.1 |
|---|---|
| Distance: | 76 |
| Num_trans: | 17 |
| All_trans: | ENST00000486859.5:76 uc064sxp.1:76 AK093793:-155 AB527705:-308 ENST00000474403.1:-362 uc064sxq.1:-362 AK314758:-383 ENST00000259608.7:-392 uc003zxe.3:-392 AJ010059:-392 JQ924063:-392 BC102029:-400 BC104491:-400 BC107484:-400 ENST00000618781.1:-402 NM_014450:-402 uc064sxo.1:-402 |
TATA-Box annotation
| Distance to TSS: | 403 |
|---|---|
| Nearest PromoterID: | NM_014450 |
| Entrez ID: | 27240 |
| Nearest Unigene: | Hs.88012 |
| Nearest Refseq: | NM_014450 |
| Nearest Ensembl: | ENSG00000137078 |
| Gene Name: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Alias: | SIT |
| Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-53(CCTCTTAGGGGC,+,0.00)" |
