Difference between revisions of "TSS:Hg 100602.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=82 |entrez_id=84904 |gc_percent=0.731343 |gene_alias=C9orf100 |gene_description=Rho guanine nucleotide exchange factor 39 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000475323.5:0 ENST00000490970.5:0 uc064sxu.1:0 uc064sxv.1:0 AK027548:0 AK225501:0 AK225529:0 BC033666:0 KJ895049:0 CU689686:0 AK303513:0 NM_032818:-52 ENST00000378387.3:-58 uc003zxm.2:-58 AY390225:-58 AY390226:-58 ENST00000468876.1:341 uc064sxx.1:341 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=82 | |distance_to_tss=82 | ||
| + | |end=35665229 | ||
|entrez_id=84904 | |entrez_id=84904 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=C9orf100 | |gene_alias=C9orf100 | ||
|gene_description=Rho guanine nucleotide exchange factor 39 | |gene_description=Rho guanine nucleotide exchange factor 39 | ||
| − | |gene_name=ARHGEF39 | + | |gene_id=84904 |
| + | |gene_name=Rho guanine nucleotide exchange factor 39 | ||
| + | |gene_source=HGNC:25909 | ||
| + | |gene_symbol=ARHGEF39 | ||
| + | |gene_synonyms=FLJ14642 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25909 | ||
|nearest_ensembl=ENSG00000137135 | |nearest_ensembl=ENSG00000137135 | ||
|nearest_promoter_id=NM_032818 | |nearest_promoter_id=NM_032818 | ||
|nearest_refseq=NM_032818 | |nearest_refseq=NM_032818 | ||
|nearest_unigene=Hs.534579 | |nearest_unigene=Hs.534579 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=35665168 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000475323.5 ENST00000490970.5 uc064sxu.1 uc064sxv.1 AK027548 AK225501 AK225529 BC033666 KJ895049 CU689686 AK303513 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100602.1 | |tss_id=hg_100602.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4E0T1 Q8N4T4 | ||
}} | }} | ||
Revision as of 17:12, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000475323.5 ENST00000490970.5 uc064sxu.1 uc064sxv.1 AK027548 AK225501 AK225529 BC033666 KJ895049 CU689686 AK303513 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000475323.5:0 ENST00000490970.5:0 uc064sxu.1:0 uc064sxv.1:0 AK027548:0 AK225501:0 AK225529:0 BC033666:0 KJ895049:0 CU689686:0 AK303513:0 NM_032818:-52 ENST00000378387.3:-58 uc003zxm.2:-58 AY390225:-58 AY390226:-58 ENST00000468876.1:341 uc064sxx.1:341 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_032818 |
| Entrez ID: | 84904 |
| Nearest Unigene: | Hs.534579 |
| Nearest Refseq: | NM_032818 |
| Nearest Ensembl: | ENSG00000137135 |
| Gene Name: | Rho guanine nucleotide exchange factor 39 |
| Gene Alias: | C9orf100 |
| Gene Description: | Rho guanine nucleotide exchange factor 39 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
