Difference between revisions of "TSS:Hg 100620.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=4750 |entrez_id=7169 |gc_percent=0.616915 |gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB |gene_description=tropomyosin 2 (beta)...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DA1= | ||
| + | |DA2B= | ||
| + | |HEL-S-273= | ||
| + | |NEM4= | ||
| + | |TMSB= | ||
| + | |all_trans=ENST00000607559.1:-151 uc064sye.1:-151 M12126:-153 ENST00000486018.1:-228 uc064syg.1:-228 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-151 | ||
|distance_to_tss=4750 | |distance_to_tss=4750 | ||
| + | |end=35685315 | ||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB | |gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB | ||
|gene_description=tropomyosin 2 (beta) | |gene_description=tropomyosin 2 (beta) | ||
| − | |gene_name=TPM2 | + | |gene_id=7169 |
| + | |gene_name=tropomyosin 2 (beta) | ||
| + | |gene_source=HGNC:12011 | ||
| + | |gene_symbol=TPM2 | ||
| + | |gene_synonyms=DA1 NEM4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12011 | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
|nearest_promoter_id=NM_001301227 | |nearest_promoter_id=NM_001301227 | ||
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=35685296 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000607559.1 uc064sye.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100620.1 | |tss_id=hg_100620.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=U3KQK2 | ||
}} | }} | ||
Revision as of 17:13, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000607559.1 uc064sye.1 |
|---|---|
| Distance: | -151 |
| Num_trans: | 5 |
| All_trans: | ENST00000607559.1:-151 uc064sye.1:-151 M12126:-153 ENST00000486018.1:-228 uc064syg.1:-228 |
TATA-Box annotation
| Distance to TSS: | 4750 |
|---|---|
| Nearest PromoterID: | NM_001301227 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | tropomyosin 2 (beta) |
| Gene Alias: | AMCD1 |
| Gene Description: | tropomyosin 2 (beta) |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
