Difference between revisions of "TSS:Hg 100721.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=4 |entrez_id=5079 |gc_percent=0.726368 |gene_alias=ALL3|BSAP |gene_description=paired box 5 |gene_name=PAX5 |gene_type=protein-c...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BSAP= | ||
| + | |all_trans=NM_001280554:-2 NM_001280553:-2 NM_001280552:-2 NM_001280551:-2 NM_001280549:-2 NM_001280548:-2 NM_001280547:-2 NM_001280555:-2 NM_016734:-2 NM_001280556:-2 NM_001280550:-2 NR_103999:-2 NR_104000:-2 ENST00000358127.8:288 uc003zzo.3:288 M96944:367 ENST00000377853.6:432 ENST00000377840.6:432 ENST00000377852.6:432 ENST00000523241.5:432 ENST00000520154.5:432 uc064tbd.1:432 uc010mlo.3:432 uc010mlp.3:432 uc010mls.3:432 uc010mlr.3:432 AY463952:432 AY463953:432 AY463954:432 AY463955:432 AY463956:432 AY463957:432 ENST00000520281.5:442 ENST00000446742.5:442 ENST00000522003.5:442 ENST00000523145.5:442 ENST00000523493.5:442 ENST00000414447.5:442 ENST00000377847.6:442 uc011lpw.3:442 uc011lpz.3:442 uc011lpx.3:442 uc011lqc.3:442 uc011lqa.3:442 uc011lpy.3:442 uc064tbe.1:442 FJ626419:442 FJ626420:442 FJ626421:442 FJ626422:442 FJ626423:442 FJ626424:442 FJ626425:442 BC156189:442 BC156927:442 AB529192:442 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-2 | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
| + | |end=37034477 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=ALL3|BSAP | |gene_alias=ALL3|BSAP | ||
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
| − | |gene_name=PAX5 | + | |gene_id=5079 |
| + | |gene_name=paired box 5 | ||
| + | |gene_source=HGNC:8619 | ||
| + | |gene_symbol=PAX5 | ||
| + | |gene_synonyms=BSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
|nearest_promoter_id=NM_001280549 | |nearest_promoter_id=NM_001280549 | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| + | |num_trans=56 | ||
| + | |species=human | ||
| + | |start=37034472 | ||
| + | |strand=- | ||
|tata_box="-34(CCCTATAAAAGT,-,0.00)" | |tata_box="-34(CCCTATAAAAGT,-,0.00)" | ||
| + | |transcript_name=NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280548 NM_001280547 NM_001280555 NM_016734 NM_001280556 NM_001280550 NR_103999 NR_104000 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100721.1 | |tss_id=hg_100721.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E7ES87 Q02548 | ||
}} | }} | ||
Revision as of 18:12, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280548 NM_001280547 NM_001280555 NM_016734 NM_001280556 NM_001280550 NR_103999 NR_104000 |
|---|---|
| Distance: | -2 |
| Num_trans: | 56 |
| All_trans: | NM_001280554:-2 NM_001280553:-2 NM_001280552:-2 NM_001280551:-2 NM_001280549:-2 NM_001280548:-2 NM_001280547:-2 NM_001280555:-2 NM_016734:-2 NM_001280556:-2 NM_001280550:-2 NR_103999:-2 NR_104000:-2 ENST00000358127.8:288 uc003zzo.3:288 M96944:367 ENST00000377853.6:432 ENST00000377840.6:432 ENST00000377852.6:432 ENST00000523241.5:432 ENST00000520154.5:432 uc064tbd.1:432 uc010mlo.3:432 uc010mlp.3:432 uc010mls.3:432 uc010mlr.3:432 AY463952:432 AY463953:432 AY463954:432 AY463955:432 AY463956:432 AY463957:432 ENST00000520281.5:442 ENST00000446742.5:442 ENST00000522003.5:442 ENST00000523145.5:442 ENST00000523493.5:442 ENST00000414447.5:442 ENST00000377847.6:442 uc011lpw.3:442 uc011lpz.3:442 uc011lpx.3:442 uc011lqc.3:442 uc011lqa.3:442 uc011lpy.3:442 uc064tbe.1:442 FJ626419:442 FJ626420:442 FJ626421:442 FJ626422:442 FJ626423:442 FJ626424:442 FJ626425:442 BC156189:442 BC156927:442 AB529192:442 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(CCCTATAAAAGT,-,0.00)" |
