Difference between revisions of "TSS:Hg 100782.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=125 |entrez_id=389741 |gc_percent=0.477612 |gene_alias=LINC01172|TCONS_00015562 |gene_description=glioblastoma down-regulated RN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TCONS_00015562= | ||
| + | |all_trans=ENST00000627065.1:18 uc010mms.5:18 BC000869:18 ENST00000618092.2:-21 uc010mmr.3:-21 AK092305:-21 AK095690:-22 ENST00000625350.1:-26 uc033cri.2:-26 BC027338:-26 NR_126046:-122 NR_015363:-122 NR_126045:-122 NR_126044:-122 KJ904265:176 BC019880:361 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=18 | ||
|distance_to_tss=125 | |distance_to_tss=125 | ||
| + | |end=39810037 | ||
|entrez_id=389741 | |entrez_id=389741 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=LINC01172|TCONS_00015562 | |gene_alias=LINC01172|TCONS_00015562 | ||
|gene_description=glioblastoma down-regulated RNA | |gene_description=glioblastoma down-regulated RNA | ||
| − | |gene_name=GLIDR | + | |gene_id=389741 |
| + | |gene_name=glioblastoma down-regulated RNA | ||
| + | |gene_source=HGNC:48823 | ||
| + | |gene_symbol=GLIDR | ||
| + | |gene_synonyms=MGC21881 TCONS_00015562 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:48823 | ||
|nearest_ensembl=ENSG00000278175 | |nearest_ensembl=ENSG00000278175 | ||
|nearest_promoter_id=NR_126044 | |nearest_promoter_id=NR_126044 | ||
|nearest_refseq=NM_203448 | |nearest_refseq=NM_203448 | ||
|nearest_unigene=Hs.380240 | |nearest_unigene=Hs.380240 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=39810030 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000627065.1 uc010mms.5 BC000869 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100782.1 | |tss_id=hg_100782.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:15, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000627065.1 uc010mms.5 BC000869 |
|---|---|
| Distance: | 18 |
| Num_trans: | 16 |
| All_trans: | ENST00000627065.1:18 uc010mms.5:18 BC000869:18 ENST00000618092.2:-21 uc010mmr.3:-21 AK092305:-21 AK095690:-22 ENST00000625350.1:-26 uc033cri.2:-26 BC027338:-26 NR_126046:-122 NR_015363:-122 NR_126045:-122 NR_126044:-122 KJ904265:176 BC019880:361 |
TATA-Box annotation
| Distance to TSS: | 125 |
|---|---|
| Nearest PromoterID: | NR_126044 |
| Entrez ID: | 389741 |
| Nearest Unigene: | Hs.380240 |
| Nearest Refseq: | NM_203448 |
| Nearest Ensembl: | ENSG00000278175 |
| Gene Name: | glioblastoma down-regulated RNA |
| Gene Alias: | LINC01172 |
| Gene Description: | glioblastoma down-regulated RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
