Difference between revisions of "TSS:Hg 100984.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=278 |entrez_id=216 |gc_percent=0.432836 |gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 |gene_descripti...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |ALDH-E1= | ||
| + | |ALDH1= | ||
| + | |ALDH11= | ||
| + | |HEL-9= | ||
| + | |HEL-S-53e= | ||
| + | |HEL12= | ||
| + | |PUMB1= | ||
| + | |RALDH1= | ||
| + | |all_trans=AK026641:0 AK000118:0 EU668318:0 AB209821:0 BC001505:9 FJ224286:-9 AK302168:-9 ENST00000297785.7:-11 uc004ajd.4:-11 ENST00000376939.5:-12 uc064tsz.1:-12 AF003341:34 AY390731:34 EU794589:34 BT006921:34 DQ890669:34 DQ893850:34 AB587538:34 KJ890654:35 ENST00000493113.1:67 uc064ttd.1:67 ENST00000482210.5:72 uc064tta.1:72 NM_000689:-273 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=278 | |distance_to_tss=278 | ||
| + | |end=72953044 | ||
|entrez_id=216 | |entrez_id=216 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
|gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 | |gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 | ||
|gene_description=aldehyde dehydrogenase 1 family member A1 | |gene_description=aldehyde dehydrogenase 1 family member A1 | ||
| − | |gene_name=ALDH1A1 | + | |gene_id=216 |
| + | |gene_name=aldehyde dehydrogenase 1 family member A1 | ||
| + | |gene_source=HGNC:402 | ||
| + | |gene_symbol=ALDH1A1 | ||
| + | |gene_synonyms=RALDH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:402 | ||
|nearest_ensembl=ENSG00000165092 | |nearest_ensembl=ENSG00000165092 | ||
|nearest_promoter_id=NM_000689 | |nearest_promoter_id=NM_000689 | ||
|nearest_refseq=NM_000689 | |nearest_refseq=NM_000689 | ||
|nearest_unigene=Hs.76392 | |nearest_unigene=Hs.76392 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=72953033 | ||
| + | |strand=- | ||
| + | |transcript_name=AK026641 AK000118 EU668318 AB209821 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100984.1 | |tss_id=hg_100984.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q59EJ0 V9HVX6 | ||
}} | }} | ||
Revision as of 18:23, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK026641 AK000118 EU668318 AB209821 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | AK026641:0 AK000118:0 EU668318:0 AB209821:0 BC001505:9 FJ224286:-9 AK302168:-9 ENST00000297785.7:-11 uc004ajd.4:-11 ENST00000376939.5:-12 uc064tsz.1:-12 AF003341:34 AY390731:34 EU794589:34 BT006921:34 DQ890669:34 DQ893850:34 AB587538:34 KJ890654:35 ENST00000493113.1:67 uc064ttd.1:67 ENST00000482210.5:72 uc064tta.1:72 NM_000689:-273 |
TATA-Box annotation
| Distance to TSS: | 278 |
|---|---|
| Nearest PromoterID: | NM_000689 |
| Entrez ID: | 216 |
| Nearest Unigene: | Hs.76392 |
| Nearest Refseq: | NM_000689 |
| Nearest Ensembl: | ENSG00000165092 |
| Gene Name: | aldehyde dehydrogenase 1 family member A1 |
| Gene Alias: | ALDC |
| Gene Description: | aldehyde dehydrogenase 1 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
