Difference between revisions of "TSS:Hg 100987.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=53 |entrez_id=216 |gc_percent=0.39801 |gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 |gene_description...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ALDH-E1= | ||
| + | |ALDH1= | ||
| + | |ALDH11= | ||
| + | |HEL-9= | ||
| + | |HEL-S-53e= | ||
| + | |HEL12= | ||
| + | |PUMB1= | ||
| + | |RALDH1= | ||
| + | |all_trans=NM_000689:-36 ENST00000376939.5:192 uc064tsz.1:192 ENST00000297785.7:193 uc004ajd.4:193 FJ224286:195 AK302168:195 AK026641:204 AK000118:204 EU668318:204 AB209821:205 BC001505:223 AF003341:248 AY390731:248 EU794589:248 BT006921:248 DQ890669:248 DQ893850:248 AB587538:248 KJ890654:249 ENST00000493113.1:281 uc064ttd.1:281 ENST00000482210.5:286 uc064tta.1:286 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=-36 | ||
|distance_to_tss=53 | |distance_to_tss=53 | ||
| + | |end=72953281 | ||
|entrez_id=216 | |entrez_id=216 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
|gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 | |gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 | ||
|gene_description=aldehyde dehydrogenase 1 family member A1 | |gene_description=aldehyde dehydrogenase 1 family member A1 | ||
| − | |gene_name=ALDH1A1 | + | |gene_id=216 |
| + | |gene_name=aldehyde dehydrogenase 1 family member A1 | ||
| + | |gene_source=HGNC:402 | ||
| + | |gene_symbol=ALDH1A1 | ||
| + | |gene_synonyms=RALDH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:402 | ||
|nearest_ensembl=ENSG00000165092 | |nearest_ensembl=ENSG00000165092 | ||
|nearest_promoter_id=NM_000689 | |nearest_promoter_id=NM_000689 | ||
|nearest_refseq=NM_000689 | |nearest_refseq=NM_000689 | ||
|nearest_unigene=Hs.76392 | |nearest_unigene=Hs.76392 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=72953247 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_000689 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100987.1 | |tss_id=hg_100987.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=V9HW83 | ||
}} | }} | ||
Revision as of 18:24, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_000689 |
|---|---|
| Distance: | -36 |
| Num_trans: | 24 |
| All_trans: | NM_000689:-36 ENST00000376939.5:192 uc064tsz.1:192 ENST00000297785.7:193 uc004ajd.4:193 FJ224286:195 AK302168:195 AK026641:204 AK000118:204 EU668318:204 AB209821:205 BC001505:223 AF003341:248 AY390731:248 EU794589:248 BT006921:248 DQ890669:248 DQ893850:248 AB587538:248 KJ890654:249 ENST00000493113.1:281 uc064ttd.1:281 ENST00000482210.5:286 uc064tta.1:286 |
TATA-Box annotation
| Distance to TSS: | 53 |
|---|---|
| Nearest PromoterID: | NM_000689 |
| Entrez ID: | 216 |
| Nearest Unigene: | Hs.76392 |
| Nearest Refseq: | NM_000689 |
| Nearest Ensembl: | ENSG00000165092 |
| Gene Name: | aldehyde dehydrogenase 1 family member A1 |
| Gene Alias: | ALDC |
| Gene Description: | aldehyde dehydrogenase 1 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
