Difference between revisions of "TSS:Hg 101020.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=173 |entrez_id=140803 |gc_percent=0.502488 |gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH |gene_description=transient receptor potential...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HMGX= | ||
| + | |HOMG= | ||
| + | |HOMG1= | ||
| + | |HSH= | ||
| + | |all_trans=AY333282:0 AY333285:0 AY333286:0 AY333287:0 AY333288:0 AF448232:60 BC156137:60 ENST00000360774.5:-168 ENST00000359047.2:-168 NM_017662:-168 uc004ajl.1:-168 uc004ajn.2:-168 AF350881:-168 AK057748:-168 ENST00000449912.6:196 NM_001177310:196 uc022bib.1:196 AY333283:196 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=0 | ||
|distance_to_tss=173 | |distance_to_tss=173 | ||
| + | |end=74887926 | ||
|entrez_id=140803 | |entrez_id=140803 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH | |gene_alias=CHAK2|HMGX|HOMG|HOMG1|HSH | ||
|gene_description=transient receptor potential cation channel subfamily M member 6 | |gene_description=transient receptor potential cation channel subfamily M member 6 | ||
| − | |gene_name=TRPM6 | + | |gene_id=140803 |
| + | |gene_name=transient receptor potential cation channel subfamily M member 6 | ||
| + | |gene_source=HGNC:17995 | ||
| + | |gene_symbol=TRPM6 | ||
| + | |gene_synonyms=CHAK2 FLJ22628 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17995 | ||
|nearest_ensembl=ENSG00000119121 | |nearest_ensembl=ENSG00000119121 | ||
|nearest_promoter_id=NM_017662 | |nearest_promoter_id=NM_017662 | ||
|nearest_refseq=NM_017662 | |nearest_refseq=NM_017662 | ||
|nearest_unigene=Hs.272225 | |nearest_unigene=Hs.272225 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=74887915 | ||
| + | |strand=- | ||
|tata_box="-88(TCTTTTCTAGGC,+,0.00),-33(GGCTGTAAAAGG,-,0.00)" | |tata_box="-88(TCTTTTCTAGGC,+,0.00),-33(GGCTGTAAAAGG,-,0.00)" | ||
| + | |transcript_name=AY333282 AY333285 AY333286 AY333287 AY333288 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101020.1 | |tss_id=hg_101020.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AY333282 AY333285 AY333286 AY333287 AY333288 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | AY333282:0 AY333285:0 AY333286:0 AY333287:0 AY333288:0 AF448232:60 BC156137:60 ENST00000360774.5:-168 ENST00000359047.2:-168 NM_017662:-168 uc004ajl.1:-168 uc004ajn.2:-168 AF350881:-168 AK057748:-168 ENST00000449912.6:196 NM_001177310:196 uc022bib.1:196 AY333283:196 |
TATA-Box annotation
| Distance to TSS: | 173 |
|---|---|
| Nearest PromoterID: | NM_017662 |
| Entrez ID: | 140803 |
| Nearest Unigene: | Hs.272225 |
| Nearest Refseq: | NM_017662 |
| Nearest Ensembl: | ENSG00000119121 |
| Gene Name: | transient receptor potential cation channel subfamily M member 6 |
| Gene Alias: | CHAK2 |
| Gene Description: | transient receptor potential cation channel subfamily M member 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-88(TCTTTTCTAGGC,+,0.00),-33(GGCTGTAAAAGG,-,0.00)" |
