Difference between revisions of "TSS:Hg 101025.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=-27 |entrez_id=55071 |gc_percent=0.741294 |gene_alias=- |gene_description=chromosome 9 open reading frame 40 |gene_name=C9orf40...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000376854.5:19 NM_017998:19 uc004ajo.5:19 AK000972:19 AK225349:55 BC039588:85 KJ894122:293 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance=19 | ||
|distance_to_tss=-27 | |distance_to_tss=-27 | ||
| + | |end=74952921 | ||
|entrez_id=55071 | |entrez_id=55071 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=chromosome 9 open reading frame 40 | |gene_description=chromosome 9 open reading frame 40 | ||
| − | |gene_name=C9orf40 | + | |gene_id=55071 |
| + | |gene_name=chromosome 9 open reading frame 40 | ||
| + | |gene_source=HGNC:23433 | ||
| + | |gene_symbol=C9orf40 | ||
| + | |gene_synonyms=FLJ10110 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23433 | ||
|nearest_ensembl=ENSG00000135045 | |nearest_ensembl=ENSG00000135045 | ||
|nearest_promoter_id=NM_017998 | |nearest_promoter_id=NM_017998 | ||
|nearest_refseq=NM_017998 | |nearest_refseq=NM_017998 | ||
|nearest_unigene=Hs.532296 | |nearest_unigene=Hs.532296 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=74952904 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000376854.5 NM_017998 uc004ajo.5 AK000972 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101025.1 | |tss_id=hg_101025.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8IXQ3 | ||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376854.5 NM_017998 uc004ajo.5 AK000972 |
|---|---|
| Distance: | 19 |
| Num_trans: | 7 |
| All_trans: | ENST00000376854.5:19 NM_017998:19 uc004ajo.5:19 AK000972:19 AK225349:55 BC039588:85 KJ894122:293 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NM_017998 |
| Entrez ID: | 55071 |
| Nearest Unigene: | Hs.532296 |
| Nearest Refseq: | NM_017998 |
| Nearest Ensembl: | ENSG00000135045 |
| Gene Name: | chromosome 9 open reading frame 40 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 40 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
