Difference between revisions of "TSS:Hg 101052.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=218 |entrez_id=158471 |gc_percent=0.517413 |gene_alias=BMCC1|BNIPXL|C9orf65|KIAA0367 |gene_description=prune homolog 2 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BNIPXL= | ||
| + | |C9orf65= | ||
| + | |KIAA0367= | ||
| + | |all_trans=ENST00000376717.6:0 ENST00000466266.6:0 ENST00000223609.10:0 uc064tuo.1:0 uc064tup.1:0 uc064tuq.1:0 BC022571:0 AK298805:0 AK296269:0 AK299857:0 ENST00000488346.5:14 uc064tux.1:14 NM_001308051:-202 NM_001308049:-202 NM_001308050:-202 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=0 | ||
|distance_to_tss=218 | |distance_to_tss=218 | ||
| + | |end=76692213 | ||
|entrez_id=158471 | |entrez_id=158471 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=BMCC1|BNIPXL|C9orf65|KIAA0367 | |gene_alias=BMCC1|BNIPXL|C9orf65|KIAA0367 | ||
|gene_description=prune homolog 2 | |gene_description=prune homolog 2 | ||
| − | |gene_name=PRUNE2 | + | |gene_id=158471 |
| + | |gene_name=prune homolog 2 (Drosophila) | ||
| + | |gene_source=HGNC:25209 | ||
| + | |gene_symbol=PRUNE2 | ||
| + | |gene_synonyms=A214N16.3 BMCC1 BNIPXL bA214N16.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25209 | ||
|nearest_ensembl=ENSG00000106772 | |nearest_ensembl=ENSG00000106772 | ||
|nearest_promoter_id=NM_001330680 | |nearest_promoter_id=NM_001330680 | ||
|nearest_refseq=NM_015225 | |nearest_refseq=NM_015225 | ||
|nearest_unigene=Hs.262857 | |nearest_unigene=Hs.262857 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=76692180 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000376717.6 ENST00000466266.6 ENST00000223609.10 uc064tuo.1 uc064tup.1 uc064tuq.1 BC022571 AK298805 AK296269 AK299857 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101052.1 | |tss_id=hg_101052.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0C4DFM3 B4DJW7 B4DSQ3 Q5JUB8 Q8WUY3 | ||
}} | }} | ||
Revision as of 18:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000376717.6 ENST00000466266.6 ENST00000223609.10 uc064tuo.1 uc064tup.1 uc064tuq.1 BC022571 AK298805 AK296269 AK299857 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000376717.6:0 ENST00000466266.6:0 ENST00000223609.10:0 uc064tuo.1:0 uc064tup.1:0 uc064tuq.1:0 BC022571:0 AK298805:0 AK296269:0 AK299857:0 ENST00000488346.5:14 uc064tux.1:14 NM_001308051:-202 NM_001308049:-202 NM_001308050:-202 |
TATA-Box annotation
| Distance to TSS: | 218 |
|---|---|
| Nearest PromoterID: | NM_001330680 |
| Entrez ID: | 158471 |
| Nearest Unigene: | Hs.262857 |
| Nearest Refseq: | NM_015225 |
| Nearest Ensembl: | ENSG00000106772 |
| Gene Name: | prune homolog 2 (Drosophila) |
| Gene Alias: | BMCC1 |
| Gene Description: | prune homolog 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
