Difference between revisions of "TSS:Hg 101134.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=35 |entrez_id=257019 |gc_percent=0.522388 |gene_alias=4.1O|EPB41L4O|EPB41LO|P410 |gene_description=FERM domain containing 3 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |EPB41L4O= | ||
| + | |EPB41LO= | ||
| + | |P410= | ||
| + | |all_trans=ENST00000328788.5:-14 NM_001244962:-14 uc004amq.1:-14 BC023560:-14 GQ129452:52 KJ906467:53 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-14 | ||
|distance_to_tss=35 | |distance_to_tss=35 | ||
| + | |end=83267273 | ||
|entrez_id=257019 | |entrez_id=257019 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
|gene_alias=4.1O|EPB41L4O|EPB41LO|P410 | |gene_alias=4.1O|EPB41L4O|EPB41LO|P410 | ||
|gene_description=FERM domain containing 3 | |gene_description=FERM domain containing 3 | ||
| − | |gene_name=FRMD3 | + | |gene_id=257019 |
| + | |gene_name=FERM domain containing 3 | ||
| + | |gene_source=HGNC:24125 | ||
| + | |gene_symbol=FRMD3 | ||
| + | |gene_synonyms=EPB41L4O MGC20553 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24125 | ||
|nearest_ensembl=ENSG00000172159 | |nearest_ensembl=ENSG00000172159 | ||
|nearest_promoter_id=NM_001244962 | |nearest_promoter_id=NM_001244962 | ||
|nearest_refseq=NM_174938 | |nearest_refseq=NM_174938 | ||
|nearest_unigene=Hs.127535 | |nearest_unigene=Hs.127535 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=83267230 | ||
| + | |strand=- | ||
|tata_box="29(GTCCTTTAAAAC,-,0.00),31(CCTTTAAAACAG,+,0.00)" | |tata_box="29(GTCCTTTAAAAC,-,0.00),31(CCTTTAAAACAG,+,0.00)" | ||
| + | |transcript_name=ENST00000328788.5 NM_001244962 uc004amq.1 BC023560 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101134.1 | |tss_id=hg_101134.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A2A2Y4 | ||
}} | }} | ||
Revision as of 18:30, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000328788.5 NM_001244962 uc004amq.1 BC023560 |
|---|---|
| Distance: | -14 |
| Num_trans: | 6 |
| All_trans: | ENST00000328788.5:-14 NM_001244962:-14 uc004amq.1:-14 BC023560:-14 GQ129452:52 KJ906467:53 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NM_001244962 |
| Entrez ID: | 257019 |
| Nearest Unigene: | Hs.127535 |
| Nearest Refseq: | NM_174938 |
| Nearest Ensembl: | ENSG00000172159 |
| Gene Name: | FERM domain containing 3 |
| Gene Alias: | 4.1O |
| Gene Description: | FERM domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "29(GTCCTTTAAAAC,-,0.00),31(CCTTTAAAACAG,+,0.00)" |
