Difference between revisions of "TSS:Hg 101154.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=353 |entrez_id=80318 |gc_percent=0.81592 |gene_alias=FKSG21|GKAP42 |gene_description=G kinase anchoring protein 1 |gene_name=GK...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GKAP42= | ||
| + | |all_trans=ENST00000376365.7:-142 uc004amz.4:-142 AB033131:-142 AB033132:-142 ENST00000485742.5:182 uc064tzj.1:182 ENST00000376371.6:-252 uc004amy.4:-252 BC014476:-252 NM_001135953:-347 NM_025211:-347 AF319476:352 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=-142 | ||
|distance_to_tss=353 | |distance_to_tss=353 | ||
| + | |end=83817490 | ||
|entrez_id=80318 | |entrez_id=80318 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
|gene_alias=FKSG21|GKAP42 | |gene_alias=FKSG21|GKAP42 | ||
|gene_description=G kinase anchoring protein 1 | |gene_description=G kinase anchoring protein 1 | ||
| − | |gene_name=GKAP1 | + | |gene_id=80318 |
| + | |gene_name=G kinase anchoring protein 1 | ||
| + | |gene_source=HGNC:17496 | ||
| + | |gene_symbol=GKAP1 | ||
| + | |gene_synonyms=FKSG21 GKAP42 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17496 | ||
|nearest_ensembl=ENSG00000165113 | |nearest_ensembl=ENSG00000165113 | ||
|nearest_promoter_id=NM_025211 | |nearest_promoter_id=NM_025211 | ||
|nearest_refseq=NM_025211 | |nearest_refseq=NM_025211 | ||
|nearest_unigene=Hs.522255 | |nearest_unigene=Hs.522255 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=83817477 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000376365.7 uc004amz.4 AB033131 AB033132 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101154.1 | |tss_id=hg_101154.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VSY0 | ||
}} | }} | ||
Revision as of 18:31, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000376365.7 uc004amz.4 AB033131 AB033132 |
|---|---|
| Distance: | -142 |
| Num_trans: | 12 |
| All_trans: | ENST00000376365.7:-142 uc004amz.4:-142 AB033131:-142 AB033132:-142 ENST00000485742.5:182 uc064tzj.1:182 ENST00000376371.6:-252 uc004amy.4:-252 BC014476:-252 NM_001135953:-347 NM_025211:-347 AF319476:352 |
TATA-Box annotation
| Distance to TSS: | 353 |
|---|---|
| Nearest PromoterID: | NM_025211 |
| Entrez ID: | 80318 |
| Nearest Unigene: | Hs.522255 |
| Nearest Refseq: | NM_025211 |
| Nearest Ensembl: | ENSG00000165113 |
| Gene Name: | G kinase anchoring protein 1 |
| Gene Alias: | FKSG21 |
| Gene Description: | G kinase anchoring protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
