Difference between revisions of "TSS:Hg 101405.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=30 |entrez_id=10558 |gc_percent=0.666667 |gene_alias=HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI |gene_description=serine palmitoyltransferas...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSN1= | ||
| + | |LBC1= | ||
| + | |LCB1= | ||
| + | |SPT1= | ||
| + | |SPTI= | ||
| + | |all_trans=NM_001281303:-16 NM_006415:-16 NM_178324:-16 AK098344:22 ENST00000482632.5:46 uc064ugl.1:46 ENST00000337841.4:47 uc004arn.3:47 BC007085:47 ENST00000488921.5:48 uc064ugn.1:48 BC068537:52 AK299153:52 ENST00000262554.6:54 uc004arl.3:54 AK291546:56 Y08685:60 KJ902128:60 CU686661:60 KJ898242:60 AB209757:74 ENST00000461132.1:92 uc064ugo.1:92 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-16 | ||
|distance_to_tss=30 | |distance_to_tss=30 | ||
| + | |end=92115458 | ||
|entrez_id=10558 | |entrez_id=10558 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI | |gene_alias=HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI | ||
|gene_description=serine palmitoyltransferase long chain base subunit 1 | |gene_description=serine palmitoyltransferase long chain base subunit 1 | ||
| − | |gene_name=SPTLC1 | + | |gene_id=10558 |
| + | |gene_name=serine palmitoyltransferase long chain base subunit 1 | ||
| + | |gene_source=HGNC:11277 | ||
| + | |gene_symbol=SPTLC1 | ||
| + | |gene_synonyms=HSAN1 LCB1 SPTI hLCB1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11277 | ||
|nearest_ensembl=ENSG00000090054 | |nearest_ensembl=ENSG00000090054 | ||
|nearest_promoter_id=NM_178324 | |nearest_promoter_id=NM_178324 | ||
|nearest_refseq=NM_006415 | |nearest_refseq=NM_006415 | ||
|nearest_unigene=Hs.90458 | |nearest_unigene=Hs.90458 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=92115429 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001281303 NM_006415 NM_178324 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101405.1 | |tss_id=hg_101405.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O15269 Q6NUL7 | ||
}} | }} | ||
Revision as of 18:42, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001281303 NM_006415 NM_178324 |
|---|---|
| Distance: | -16 |
| Num_trans: | 23 |
| All_trans: | NM_001281303:-16 NM_006415:-16 NM_178324:-16 AK098344:22 ENST00000482632.5:46 uc064ugl.1:46 ENST00000337841.4:47 uc004arn.3:47 BC007085:47 ENST00000488921.5:48 uc064ugn.1:48 BC068537:52 AK299153:52 ENST00000262554.6:54 uc004arl.3:54 AK291546:56 Y08685:60 KJ902128:60 CU686661:60 KJ898242:60 AB209757:74 ENST00000461132.1:92 uc064ugo.1:92 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_178324 |
| Entrez ID: | 10558 |
| Nearest Unigene: | Hs.90458 |
| Nearest Refseq: | NM_006415 |
| Nearest Ensembl: | ENSG00000090054 |
| Gene Name: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Alias: | HSAN1 |
| Gene Description: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
