Difference between revisions of "TSS:Hg 101439.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=72 |entrez_id=1842 |gc_percent=0.343284 |gene_alias=- |gene_description=extracellular matrix protein 2 |gene_name=ECM2 |gene_type=p...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK296458:19 AK312820:24 AK303922:26 ENST00000344604.9:-29 ENST00000375540.5:-29 uc011lty.3:-29 uc004asi.4:-29 BX537976:-29 AB011792:44 ENST00000444490.6:-66 NM_001197296:-66 NM_001197295:-66 NM_001393:-66 uc004asf.5:-66 | ||
| + | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| + | |distance=19 | ||
|distance_to_tss=72 | |distance_to_tss=72 | ||
| + | |end=92536026 | ||
|entrez_id=1842 | |entrez_id=1842 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=extracellular matrix protein 2 | |gene_description=extracellular matrix protein 2 | ||
| − | |gene_name=ECM2 | + | |gene_id=1842 |
| + | |gene_name=extracellular matrix protein 2 | ||
| + | |gene_source=HGNC:3154 | ||
| + | |gene_symbol=ECM2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3154 | ||
|nearest_ensembl=ENSG00000106823 | |nearest_ensembl=ENSG00000106823 | ||
|nearest_promoter_id=NM_001197295 | |nearest_promoter_id=NM_001197295 | ||
|nearest_refseq=NM_001393 | |nearest_refseq=NM_001393 | ||
|nearest_unigene=Hs.117060 | |nearest_unigene=Hs.117060 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=92536013 | ||
| + | |strand=- | ||
|tata_box="1(GTTTTTAAAGAA,+,0.00)" | |tata_box="1(GTTTTTAAAGAA,+,0.00)" | ||
| + | |transcript_name=AK296458 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101439.1 | |tss_id=hg_101439.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DK93 | ||
}} | }} | ||
Revision as of 18:43, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK296458 |
|---|---|
| Distance: | 19 |
| Num_trans: | 14 |
| All_trans: | AK296458:19 AK312820:24 AK303922:26 ENST00000344604.9:-29 ENST00000375540.5:-29 uc011lty.3:-29 uc004asi.4:-29 BX537976:-29 AB011792:44 ENST00000444490.6:-66 NM_001197296:-66 NM_001197295:-66 NM_001393:-66 uc004asf.5:-66 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001197295 |
| Entrez ID: | 1842 |
| Nearest Unigene: | Hs.117060 |
| Nearest Refseq: | NM_001393 |
| Nearest Ensembl: | ENSG00000106823 |
| Gene Name: | extracellular matrix protein 2 |
| Gene Alias: | - |
| Gene Description: | extracellular matrix protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "1(GTTTTTAAAGAA,+,0.00)" |
