Difference between revisions of "TSS:Hg 101560.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=5473 |entrez_id=100507346 |gc_percent=0.577114 |gene_alias=- |gene_description=uncharacterized LOC100507346 |gene_name=LOC10050...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000549678.1:-97 uc064ump.1:-97 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-97 | ||
|distance_to_tss=5473 | |distance_to_tss=5473 | ||
| + | |end=95469092 | ||
|entrez_id=100507346 | |entrez_id=100507346 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100507346 | |gene_description=uncharacterized LOC100507346 | ||
| − | |gene_name= | + | |gene_id=5727 |
| + | |gene_name=patched 1 | ||
| + | |gene_source=HGNC:9585 | ||
| + | |gene_symbol=PTCH1 | ||
| + | |gene_synonyms=BCNS | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:9585 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_038982 | |nearest_promoter_id=NR_038982 | ||
|nearest_refseq=NR_038982 | |nearest_refseq=NR_038982 | ||
|nearest_unigene=Hs.661847 | |nearest_unigene=Hs.661847 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=95469071 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000549678.1 uc064ump.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101560.1 | |tss_id=hg_101560.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:48, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000549678.1 uc064ump.1 |
|---|---|
| Distance: | -97 |
| Num_trans: | 2 |
| All_trans: | ENST00000549678.1:-97 uc064ump.1:-97 |
TATA-Box annotation
| Distance to TSS: | 5473 |
|---|---|
| Nearest PromoterID: | NR_038982 |
| Entrez ID: | 100507346 |
| Nearest Unigene: | Hs.661847 |
| Nearest Refseq: | NR_038982 |
| Nearest Ensembl: | |
| Gene Name: | patched 1 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100507346 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
