Difference between revisions of "TSS:Hg 101585.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=-48 |entrez_id=375748 |gc_percent=0.59204 |gene_alias=BMFS2|C9orf102|RAD26L|SR278 |gene_description=ERCC excision repair 6 like...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C9orf102= | ||
| + | |RAD26L= | ||
| + | |SR278= | ||
| + | |all_trans=ENST00000429781.1:0 uc004avr.3:0 AK092137:0 ENST00000433656.2:67 uc064unj.1:67 AF170307:67 ENST00000427259.1:277 uc064unm.1:277 ENST00000321517.3:-383 uc004avs.3:-383 AF194971:-383 ENST00000412446.5:-384 NR_023390:-384 NR_023389:-384 uc004avp.5:-384 AL389954:-384 ENST00000448465.1:477 uc064unn.1:477 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=-48 | |distance_to_tss=-48 | ||
| + | |end=95875593 | ||
|entrez_id=375748 | |entrez_id=375748 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=BMFS2|C9orf102|RAD26L|SR278 | |gene_alias=BMFS2|C9orf102|RAD26L|SR278 | ||
|gene_description=ERCC excision repair 6 like 2 | |gene_description=ERCC excision repair 6 like 2 | ||
| − | |gene_name= | + | |gene_id=100128782 |
| + | |gene_name=long intergenic non-protein coding RNA 476 | ||
| + | |gene_source=HGNC:27858 | ||
| + | |gene_symbol=LINC00476 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27858 | ||
|nearest_ensembl=ENSG00000182150 | |nearest_ensembl=ENSG00000182150 | ||
|nearest_promoter_id=NM_001010895 | |nearest_promoter_id=NM_001010895 | ||
|nearest_refseq=NM_020207 | |nearest_refseq=NM_020207 | ||
|nearest_unigene=Hs.432364 | |nearest_unigene=Hs.432364 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=95875546 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000429781.1 uc004avr.3 AK092137 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101585.1 | |tss_id=hg_101585.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:49, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000429781.1 uc004avr.3 AK092137 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000429781.1:0 uc004avr.3:0 AK092137:0 ENST00000433656.2:67 uc064unj.1:67 AF170307:67 ENST00000427259.1:277 uc064unm.1:277 ENST00000321517.3:-383 uc004avs.3:-383 AF194971:-383 ENST00000412446.5:-384 NR_023390:-384 NR_023389:-384 uc004avp.5:-384 AL389954:-384 ENST00000448465.1:477 uc064unn.1:477 |
TATA-Box annotation
| Distance to TSS: | -48 |
|---|---|
| Nearest PromoterID: | NM_001010895 |
| Entrez ID: | 375748 |
| Nearest Unigene: | Hs.432364 |
| Nearest Refseq: | NM_020207 |
| Nearest Ensembl: | ENSG00000182150 |
| Gene Name: | long intergenic non-protein coding RNA 476 |
| Gene Alias: | BMFS2 |
| Gene Description: | ERCC excision repair 6 like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
