Difference between revisions of "TSS:Hg 101625.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=-139 |entrez_id=4686 |gc_percent=0.572139 |gene_alias=CBP80|NCBP|Sto1 |gene_description=nuclear cap binding protein subunit 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NCBP= | ||
| + | |Sto1= | ||
| + | |all_trans=ENST00000375172.6:-12 uc064uql.1:-12 AK094043:-12 AK291199:-12 BC035604:-28 BX648493:-29 BX538308:-31 AK128615:-56 ENST00000341170.4:-286 uc004axn.4:-286 NM_139246:-391 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=-12 | ||
|distance_to_tss=-139 | |distance_to_tss=-139 | ||
| + | |end=97633289 | ||
|entrez_id=4686 | |entrez_id=4686 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=CBP80|NCBP|Sto1 | |gene_alias=CBP80|NCBP|Sto1 | ||
|gene_description=nuclear cap binding protein subunit 1 | |gene_description=nuclear cap binding protein subunit 1 | ||
| − | |gene_name= | + | |gene_id=158427 |
| + | |gene_name=thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 | ||
| + | |gene_source=HGNC:30087 | ||
| + | |gene_symbol=TSTD2 | ||
| + | |gene_synonyms=PP4189 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30087 | ||
|nearest_ensembl=ENSG00000136937 | |nearest_ensembl=ENSG00000136937 | ||
|nearest_promoter_id=NM_002486 | |nearest_promoter_id=NM_002486 | ||
|nearest_refseq=NM_002486 | |nearest_refseq=NM_002486 | ||
|nearest_unigene=Hs.595669 | |nearest_unigene=Hs.595669 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=97633278 | ||
| + | |strand=- | ||
|tata_box="-73(GCTTTTCTACCC,+,0.00)" | |tata_box="-73(GCTTTTCTACCC,+,0.00)" | ||
| + | |transcript_name=ENST00000375172.6 uc064uql.1 AK094043 AK291199 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101625.1 | |tss_id=hg_101625.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T7X0 | ||
}} | }} | ||
Revision as of 18:51, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375172.6 uc064uql.1 AK094043 AK291199 |
|---|---|
| Distance: | -12 |
| Num_trans: | 11 |
| All_trans: | ENST00000375172.6:-12 uc064uql.1:-12 AK094043:-12 AK291199:-12 BC035604:-28 BX648493:-29 BX538308:-31 AK128615:-56 ENST00000341170.4:-286 uc004axn.4:-286 NM_139246:-391 |
TATA-Box annotation
| Distance to TSS: | -139 |
|---|---|
| Nearest PromoterID: | NM_002486 |
| Entrez ID: | 4686 |
| Nearest Unigene: | Hs.595669 |
| Nearest Refseq: | NM_002486 |
| Nearest Ensembl: | ENSG00000136937 |
| Gene Name: | thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 |
| Gene Alias: | CBP80 |
| Gene Description: | nuclear cap binding protein subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-73(GCTTTTCTACCC,+,0.00)" |
