Difference between revisions of "TSS:Hg 101631.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=39 |entrez_id=7507 |gc_percent=0.736318 |gene_alias=XP1|XPAC |gene_description="XPA, DNA damage recognition and repair factor" |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |XPAC= | ||
| + | |all_trans=ENST00000375128.4:3 uc004axr.5:3 BC014965:3 NM_000380:-28 NR_027302:-28 D14533:42 ENST00000496104.1:65 uc064uqw.1:65 ENST00000462523.5:67 uc064uqu.1:67 KJ892389:68 BT019518:68 DQ893624:68 DQ895423:68 AB590398:68 KC899693:68 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=3 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=97697381 | ||
|entrez_id=7507 | |entrez_id=7507 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=XP1|XPAC | |gene_alias=XP1|XPAC | ||
|gene_description="XPA, DNA damage recognition and repair factor" | |gene_description="XPA, DNA damage recognition and repair factor" | ||
| − | |gene_name=XPA | + | |gene_id=7507 |
| + | |gene_name="xeroderma pigmentosum, complementation group A" | ||
| + | |gene_source=HGNC:12814 | ||
| + | |gene_symbol=XPA | ||
| + | |gene_synonyms=XP1 XPAC | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12814 | ||
|nearest_ensembl=ENSG00000136936 | |nearest_ensembl=ENSG00000136936 | ||
|nearest_promoter_id=NR_027302 | |nearest_promoter_id=NR_027302 | ||
|nearest_refseq=NM_000380 | |nearest_refseq=NM_000380 | ||
|nearest_unigene=Hs.654364 | |nearest_unigene=Hs.654364 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=97697359 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000375128.4 uc004axr.5 BC014965 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101631.1 | |tss_id=hg_101631.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P23025 | ||
}} | }} | ||
Revision as of 18:51, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375128.4 uc004axr.5 BC014965 |
|---|---|
| Distance: | 3 |
| Num_trans: | 16 |
| All_trans: | ENST00000375128.4:3 uc004axr.5:3 BC014965:3 NM_000380:-28 NR_027302:-28 D14533:42 ENST00000496104.1:65 uc064uqw.1:65 ENST00000462523.5:67 uc064uqu.1:67 KJ892389:68 BT019518:68 DQ893624:68 DQ895423:68 AB590398:68 KC899693:68 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NR_027302 |
| Entrez ID: | 7507 |
| Nearest Unigene: | Hs.654364 |
| Nearest Refseq: | NM_000380 |
| Nearest Ensembl: | ENSG00000136936 |
| Gene Name: | "xeroderma pigmentosum, complementation group A" |
| Gene Alias: | XP1 |
| Gene Description: | "XPA, DNA damage recognition and repair factor" |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
