Difference between revisions of "TSS:Hg 101679.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=361 |entrez_id=55357 |gc_percent=0.59204 |gene_alias=PARIS-1|PARIS1|TBC1D2A |gene_description=TBC1 domain family member 2 |gene_...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |PARIS1= | ||
| + | |TBC1D2A= | ||
| + | |all_trans=AK298575:-25 CU687204:68 AK026105:142 AB209721:-154 AB449882:-174 ENST00000375064.5:-213 uc064urv.1:-213 AF318370:-213 ENST00000342112.9:-223 uc004ayr.4:-223 AK131290:-232 BC071978:-263 ENST00000375066.6:-266 uc004ayq.4:-266 AY026527:-266 ENST00000465784.6:-354 NM_001267571:-354 NM_018421:-354 NR_051978:-354 uc011lvb.3:-354 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=-25 | ||
|distance_to_tss=361 | |distance_to_tss=361 | ||
| + | |end=98255367 | ||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=PARIS-1|PARIS1|TBC1D2A | |gene_alias=PARIS-1|PARIS1|TBC1D2A | ||
|gene_description=TBC1 domain family member 2 | |gene_description=TBC1 domain family member 2 | ||
| − | |gene_name=TBC1D2 | + | |gene_id=55357 |
| + | |gene_name=TBC1 domain family member 2 | ||
| + | |gene_source=HGNC:18026 | ||
| + | |gene_symbol=TBC1D2 | ||
| + | |gene_synonyms=Armus PARIS1 TBC1D2A | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18026 | ||
|nearest_ensembl=ENSG00000095383 | |nearest_ensembl=ENSG00000095383 | ||
|nearest_promoter_id=NM_001267571 | |nearest_promoter_id=NM_001267571 | ||
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=98255352 | ||
| + | |strand=- | ||
| + | |transcript_name=AK298575 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101679.1 | |tss_id=hg_101679.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:53, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK298575 |
|---|---|
| Distance: | -25 |
| Num_trans: | 20 |
| All_trans: | AK298575:-25 CU687204:68 AK026105:142 AB209721:-154 AB449882:-174 ENST00000375064.5:-213 uc064urv.1:-213 AF318370:-213 ENST00000342112.9:-223 uc004ayr.4:-223 AK131290:-232 BC071978:-263 ENST00000375066.6:-266 uc004ayq.4:-266 AY026527:-266 ENST00000465784.6:-354 NM_001267571:-354 NM_018421:-354 NR_051978:-354 uc011lvb.3:-354 |
TATA-Box annotation
| Distance to TSS: | 361 |
|---|---|
| Nearest PromoterID: | NM_001267571 |
| Entrez ID: | 55357 |
| Nearest Unigene: | Hs.371016 |
| Nearest Refseq: | NM_018421 |
| Nearest Ensembl: | ENSG00000095383 |
| Gene Name: | TBC1 domain family member 2 |
| Gene Alias: | PARIS-1 |
| Gene Description: | TBC1 domain family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
