Difference between revisions of "TSS:Hg 101683.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=-5 |entrez_id=55357 |gc_percent=0.716418 |gene_alias=PARIS-1|PARIS1|TBC1D2A |gene_description=TBC1 domain family member 2 |gene_...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |PARIS1= | ||
| + | |TBC1D2A= | ||
| + | |all_trans=ENST00000465784.6:0 NM_001267571:0 NM_018421:0 NR_051978:0 uc011lvb.3:0 ENST00000375066.6:64 uc004ayq.4:64 AY026527:64 BC071978:67 AK131290:98 ENST00000342112.9:107 uc004ayr.4:107 ENST00000375064.5:117 uc064urv.1:117 AF318370:117 AB449882:156 AB209721:176 AK298575:305 CU687204:412 AK026105:486 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
| + | |end=98255755 | ||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=PARIS-1|PARIS1|TBC1D2A | |gene_alias=PARIS-1|PARIS1|TBC1D2A | ||
|gene_description=TBC1 domain family member 2 | |gene_description=TBC1 domain family member 2 | ||
| − | |gene_name=TBC1D2 | + | |gene_id=55357 |
| + | |gene_name=TBC1 domain family member 2 | ||
| + | |gene_source=HGNC:18026 | ||
| + | |gene_symbol=TBC1D2 | ||
| + | |gene_synonyms=Armus PARIS1 TBC1D2A | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18026 | ||
|nearest_ensembl=ENSG00000095383 | |nearest_ensembl=ENSG00000095383 | ||
|nearest_promoter_id=NM_018421 | |nearest_promoter_id=NM_018421 | ||
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=98255696 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000465784.6 NM_001267571 NM_018421 NR_051978 uc011lvb.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101683.1 | |tss_id=hg_101683.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9BYX2 | ||
}} | }} | ||
Revision as of 18:54, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000465784.6 NM_001267571 NM_018421 NR_051978 uc011lvb.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000465784.6:0 NM_001267571:0 NM_018421:0 NR_051978:0 uc011lvb.3:0 ENST00000375066.6:64 uc004ayq.4:64 AY026527:64 BC071978:67 AK131290:98 ENST00000342112.9:107 uc004ayr.4:107 ENST00000375064.5:117 uc064urv.1:117 AF318370:117 AB449882:156 AB209721:176 AK298575:305 CU687204:412 AK026105:486 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_018421 |
| Entrez ID: | 55357 |
| Nearest Unigene: | Hs.371016 |
| Nearest Refseq: | NM_018421 |
| Nearest Ensembl: | ENSG00000095383 |
| Gene Name: | TBC1 domain family member 2 |
| Gene Alias: | PARIS-1 |
| Gene Description: | TBC1 domain family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
