Difference between revisions of "TSS:Hg 101873.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=105 |entrez_id=8727 |gc_percent=0.800995 |gene_alias=ACRP|CLLP|alpha-CATU |gene_description=catenin alpha like 1 |gene_name=CTNN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CLLP= | ||
| + | |all_trans=AF030233:1 AF135021:3 U97067:3 AF006070:3 AF080071:6 AK314677:-7 AK223230:-8 AK022926:-8 ENST00000374593.4:-21 uc064uzg.1:-21 BC117208:24 BC117234:24 ENST00000374595.8:-31 uc004bdp.3:-31 ENST00000325551.8:-38 uc004bdo.3:-38 AK022834:-38 HQ258655:43 AB451283:45 AB451415:45 NM_001286974:-103 NM_003798:-103 | ||
| + | |alpha-CATU= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=1 | ||
|distance_to_tss=105 | |distance_to_tss=105 | ||
| + | |end=109013491 | ||
|entrez_id=8727 | |entrez_id=8727 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=ACRP|CLLP|alpha-CATU | |gene_alias=ACRP|CLLP|alpha-CATU | ||
|gene_description=catenin alpha like 1 | |gene_description=catenin alpha like 1 | ||
| − | |gene_name=CTNNAL1 | + | |gene_id=8727 |
| + | |gene_name=catenin alpha like 1 | ||
| + | |gene_source=HGNC:2512 | ||
| + | |gene_symbol=CTNNAL1 | ||
| + | |gene_synonyms=CLLP alpha-CATU | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2512 | ||
|nearest_ensembl=ENSG00000119326 | |nearest_ensembl=ENSG00000119326 | ||
|nearest_promoter_id=NM_001286974 | |nearest_promoter_id=NM_001286974 | ||
|nearest_refseq=NM_003798 | |nearest_refseq=NM_003798 | ||
|nearest_unigene=Hs.58488 | |nearest_unigene=Hs.58488 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=109013486 | ||
| + | |strand=- | ||
| + | |transcript_name=AF030233 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101873.1 | |tss_id=hg_101873.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:02, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF030233 |
|---|---|
| Distance: | 1 |
| Num_trans: | 22 |
| All_trans: | AF030233:1 AF135021:3 U97067:3 AF006070:3 AF080071:6 AK314677:-7 AK223230:-8 AK022926:-8 ENST00000374593.4:-21 uc064uzg.1:-21 BC117208:24 BC117234:24 ENST00000374595.8:-31 uc004bdp.3:-31 ENST00000325551.8:-38 uc004bdo.3:-38 AK022834:-38 HQ258655:43 AB451283:45 AB451415:45 NM_001286974:-103 NM_003798:-103 |
TATA-Box annotation
| Distance to TSS: | 105 |
|---|---|
| Nearest PromoterID: | NM_001286974 |
| Entrez ID: | 8727 |
| Nearest Unigene: | Hs.58488 |
| Nearest Refseq: | NM_003798 |
| Nearest Ensembl: | ENSG00000119326 |
| Gene Name: | catenin alpha like 1 |
| Gene Alias: | ACRP |
| Gene Description: | catenin alpha like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
