Difference between revisions of "TSS:Hg 101874.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=72 |entrez_id=8727 |gc_percent=0.78607 |gene_alias=ACRP|CLLP|alpha-CATU |gene_description=catenin alpha like 1 |gene_name=CTNNAL...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CLLP= | ||
| + | |all_trans=ENST00000374595.8:0 ENST00000325551.8:0 ENST00000374593.4:0 uc004bdp.3:0 uc004bdo.3:0 uc064uzg.1:0 AK022834:0 AK223230:0 AK022926:0 AK314677:0 AF030233:7 AF135021:9 U97067:9 AF006070:9 AF080071:12 BC117208:30 BC117234:30 NM_001286974:-43 NM_003798:-43 HQ258655:49 AB451283:51 AB451415:51 | ||
| + | |alpha-CATU= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=0 | ||
|distance_to_tss=72 | |distance_to_tss=72 | ||
| + | |end=109013551 | ||
|entrez_id=8727 | |entrez_id=8727 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=ACRP|CLLP|alpha-CATU | |gene_alias=ACRP|CLLP|alpha-CATU | ||
|gene_description=catenin alpha like 1 | |gene_description=catenin alpha like 1 | ||
| − | |gene_name=CTNNAL1 | + | |gene_id=8727 |
| + | |gene_name=catenin alpha like 1 | ||
| + | |gene_source=HGNC:2512 | ||
| + | |gene_symbol=CTNNAL1 | ||
| + | |gene_synonyms=CLLP alpha-CATU | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2512 | ||
|nearest_ensembl=ENSG00000119326 | |nearest_ensembl=ENSG00000119326 | ||
|nearest_promoter_id=NM_001286974 | |nearest_promoter_id=NM_001286974 | ||
|nearest_refseq=NM_003798 | |nearest_refseq=NM_003798 | ||
|nearest_unigene=Hs.58488 | |nearest_unigene=Hs.58488 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=109013492 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374595.8 ENST00000325551.8 ENST00000374593.4 uc004bdp.3 uc004bdo.3 uc064uzg.1 AK022834 AK223230 AK022926 AK314677 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101874.1 | |tss_id=hg_101874.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B2RBI4 B3KMX6 Q5JTQ6 Q9UBT7 | ||
}} | }} | ||
Revision as of 19:02, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374595.8 ENST00000325551.8 ENST00000374593.4 uc004bdp.3 uc004bdo.3 uc064uzg.1 AK022834 AK223230 AK022926 AK314677 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000374595.8:0 ENST00000325551.8:0 ENST00000374593.4:0 uc004bdp.3:0 uc004bdo.3:0 uc064uzg.1:0 AK022834:0 AK223230:0 AK022926:0 AK314677:0 AF030233:7 AF135021:9 U97067:9 AF006070:9 AF080071:12 BC117208:30 BC117234:30 NM_001286974:-43 NM_003798:-43 HQ258655:49 AB451283:51 AB451415:51 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001286974 |
| Entrez ID: | 8727 |
| Nearest Unigene: | Hs.58488 |
| Nearest Refseq: | NM_003798 |
| Nearest Ensembl: | ENSG00000119326 |
| Gene Name: | catenin alpha like 1 |
| Gene Alias: | ACRP |
| Gene Description: | catenin alpha like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
